Add optimized config from tower

nf-core · Feb 6, 2024 · 384a352 · 384a352
1 parent 3295283
commit 384a352
Showing 1 changed file with 25 additions and 0 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -17,3 +17,28 @@ params {
     // File containing SRA ids from nf-core/rnaseq -profile test_full for full-sized test
     input  = 'https://raw.githubusercontent.com/nf-core/test-datasets/100736c99d87667fb7c247c267bc8acfac647bed/testdata/v1.12.0/sra_ids_rnaseq_test_full.csv'
 }
+
+process {
+  withName: 'NFCORE_FETCHNGS:SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS' {
+    cpus = { 1 * task.attempt }
+    memory = { 1.GB * task.attempt }
+  }
+  withName: 'NFCORE_FETCHNGS:SRA:MULTIQC_MAPPINGS_CONFIG' {
+    cpus = { 1 * task.attempt }
+    memory = { 1.GB * task.attempt }
+  }
+  withName: 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP' {
+    cpus = { 1 * task.attempt }
+    memory = { 1.GB * task.attempt }
+  }
+  withName: 'NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO' {
+    cpus = { 1 * task.attempt }
+    memory = { 1.GB * task.attempt }
+  }
+  withName: 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP' {
+    cpus = { 1 * task.attempt }
+    memory = { 1.GB * task.attempt }
+  }
+  errorStrategy = 'retry'
+  maxRetries = 2
+}