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Proposal: Rewrite SRA_RUNINFO_TO_FTP as native process #36

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Proposal: Rewrite SRA_RUNINFO_TO_FTP as native process

Proposal: Rewrite SRA_RUNINFO_TO_FTP as native process #36

Triggered via pull request February 21, 2025 00:18
@bentshermanbentsherman
opened #337
Status Success
Total duration 33s
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22 errors
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed