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Switch to nf-validation#220

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jonasscheid merged 14 commits intonf-core:devnf-core/epitopeprediction:devfrom jonasscheid:fix_lost_vcfgz_supportjonasscheid/epitopeprediction:fix_lost_vcfgz_supportCopy head branch name to clipboardDec 19, 2023

+104-463

Commits

Commits on Dec 1, 2023

• allow vcfgz again

  jonasscheid

  authored
  bab8e0a

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Commits on Dec 4, 2023

• fix compressed vcf parsing, refactored allele checking

  jonasscheid

  committed
  202fa44

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• bump python version of samplechecker

  jonasscheid

  committed
  2dd79dd

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• add staging in samplesheet checker to determine inputtype

  jonasscheid

  committed
  d04e77f

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Commits on Dec 5, 2023

• switch to nf-validation

  jonasscheid

  committed
  7868e5c

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• remove conda check, threw warning

  jonasscheid

  committed
  7396472

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• swtich back to old len settings

  jonasscheid

  committed
  0b1358a

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• add changelog, fix lint

  jonasscheid

  committed
  3f3bcf9

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• change internal mhcclass to mhc_class for consistency

  jonasscheid

  committed
  1ffdacb

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Commits on Dec 13, 2023

• resolve conflicts

  jonasscheid

  committed
  db037bd

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• Add check for mhc_class-allele combination

  jonasscheid

  committed
  400b831

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Commits on Dec 18, 2023

• Remove txt filename input from schema_input.json

  jonasscheid

  authored
  a34c450

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Commits on Dec 19, 2023

• Update workflows/epitopeprediction.nf

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  jonasscheid

  and

  christopher-mohr

  authored
  74da74b

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• Update workflows/epitopeprediction.nf

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  jonasscheid

  and

  christopher-mohr

  authored
  693bd50

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