Make prettier happy

.github/workflows/ci.yml

@@ -59,6 +59,9 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
+        NXF_VER:
+          - "24.04.2"
+          - "latest-everything"
         parameters:
           - "--skip_trimming"
           - "--skip_consensus_peaks"
@@ -88,5 +91,5 @@ jobs:
 
       - name: Run pipeline with various parameters (conda)
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test,conda --outdir ./results ${{ matrix.parameters }} 
+          nextflow run ${GITHUB_WORKSPACE} -profile test,conda --outdir ./results ${{ matrix.parameters }}
         if: "${{ github.base_ref == 'master' }}"

CHANGELOG.md

@@ -9,9 +9,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Parameters
 
-| Old parameter | New parameter                    |
-| ------------- | -------------------------------- |
-|               |                                  |
+| Old parameter | New parameter |
+| ------------- | ------------- |
+|               |               |
 
 > **NB:** Parameter has been **updated** if both old and new parameter information is present.
 > **NB:** Parameter has been **added** if just the new parameter information is present.

main.nf

@@ -112,7 +112,7 @@ workflow {
         args,
         params.outdir
     )
-    
+
     //
     // WORKFLOW: Run main workflow
     //

nextflow.config

@@ -304,10 +304,10 @@ validation {
 """
         afterText = """${manifest.doi ? "* The pipeline\n" : ""}${manifest.doi.tokenize(",").collect { "  https://doi.org/${it.trim().replace('https://doi.org/','')}"}.join("\n")}${manifest.doi ? "\n" : ""}
 * The nf-core framework
-  https://doi.org/10.1038/s41587-020-0439-x
+    https://doi.org/10.1038/s41587-020-0439-x
 
 * Software dependencies
-  https://github.com/${manifest.name}/blob/master/CITATIONS.md
+    https://github.com/${manifest.name}/blob/master/CITATIONS.md
 """
     }
     summary {

subworkflows/local/utils_nfcore_chipseq_pipeline/main.nf

@@ -46,7 +46,6 @@ workflow PIPELINE_INITIALISATION {
         workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1
     )
 
-
     //
     // Validate parameters and generate parameter summary to stdout
     //
@@ -55,7 +54,7 @@ workflow PIPELINE_INITIALISATION {
         validate_params,
         null
     )
-    
+
     //
     // Check config provided to the pipeline
     //
@@ -91,7 +90,6 @@ workflow PIPELINE_COMPLETION {
     email           //  string: email address
     email_on_fail   //  string: email address sent on pipeline failure
     plaintext_email // boolean: Send plain-text email instead of HTML
-
     outdir          //    path: Path to output directory where results will be published
     monochrome_logs // boolean: Disable ANSI colour codes in log output
     hook_url        //  string: hook URL for notifications