diff --git a/nextflow_schema.json b/nextflow_schema.json
index b0e6317c..b7c4e106 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -399,16 +399,6 @@
                     "description": "Skip MultiQC.",
                     "fa_icon": "fas fa-fast-forward"
                 },
-                "skip_peak_calling": {
-                    "type": "boolean",
-                    "description": "Skip MACS2 peak calling.",
-                    "fa_icon": "fas fa-fast-forward"
-                },
-                "skip_reporting": {
-                    "type": "boolean",
-                    "description": "Skip reporting.",
-                    "fa_icon": "fas fa-fast-forward"
-                },
                 "skip_qc": {
                     "type": "boolean",
                     "fa_icon": "fas fa-fast-forward",