Fix save_unaligned parameter description in schema

CHANGELOG.md

@@ -24,6 +24,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[#367](https://github.com/nf-core/chipseq/issues/367)] - Get rid of `CheckIfExists` for params paths.
 - [[#370](https://github.com/nf-core/chipseq/issues/370)] - Fix stack overflow exceptions in phantompeakqualtools ([see here](https://github.com/kundajelab/phantompeakqualtools/issues/3)).
 - [[#387](https://github.com/nf-core/chipseq/issues/387)] - Get rid of the `lib` folder and rearrange the pipeline accordingly.
+- [[#385](https://github.com/nf-core/chipseq/issues/385)] - Fix `--save_unaligned` description in schema.
 
 ### Software dependencies
 

nextflow_schema.json

@@ -261,7 +261,7 @@
                 "save_unaligned": {
                     "type": "boolean",
                     "fa_icon": "fas fa-save",
-                    "description": "Where possible, save unaligned reads from either STAR, HISAT2 or Salmon to the results directory.",
+                    "description": "Save unaligned sequences to the output directory (only available for Bowtie 2 And STAR.",
                     "help_text": "This may either be in the form of FastQ or BAM files depending on the options available for that particular tool."
                 },
                 "bamtools_filter_pe_config": {
@@ -399,6 +399,16 @@
                     "description": "Skip MultiQC.",
                     "fa_icon": "fas fa-fast-forward"
                 },
+                "skip_peak_calling": {
+                    "type": "boolean",
+                    "description": "Skip MACS2 peak calling.",
+                    "fa_icon": "fas fa-fast-forward"
+                },
+                "skip_reporting": {
+                    "type": "boolean",
+                    "description": "Skip reporting.",
+                    "fa_icon": "fas fa-fast-forward"
+                },
                 "skip_qc": {
                     "type": "boolean",
                     "fa_icon": "fas fa-fast-forward",