Merge pull request #371 from krokicki/fix_stack_overflow

Fix stack overflow
nf-core · Nov 22, 2023 · 9eee551 · 9eee551
2 parents 42b50c3 + 0bb54eb
commit 9eee551
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[#343](https://github.com/nf-core/chipseq/issues/343)] - Provide replicate information explicitly in samplesheet.
 - Updated pipeline template to [nf-core/tools 2.10](https://github.com/nf-core/tools/releases/tag/2.10).
 - [[#367](https://github.com/nf-core/chipseq/issues/367)] - Get rid of `CheckIfExists` for params paths.
+- [[#370](https://github.com/nf-core/chipseq/issues/370)] - Fix stack overflow exceptions in phantompeakqualtools ([see here](https://github.com/kundajelab/phantompeakqualtools/issues/3)).
 
 ### Software dependencies
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -418,6 +418,7 @@ process {
     }
 
     withName: 'PHANTOMPEAKQUALTOOLS' {
+        ext.args   = { "--max-ppsize=500000" }
         ext.args2  = { "-p=$task.cpus" }
         publishDir = [
             path: { "${params.outdir}/${params.aligner}/merged_library/phantompeakqualtools" },