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Important! Template update for nf-core/tools v3.1.0 #396

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Version 3.1.0 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-3.1.0 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v3.1.0 release page.

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Version 3.1.1 of the nf-core/tools pipeline template has just been released. This pull-request is now outdated and has been closed in favour of #398

Please use #398 to merge in the new changes from the nf-core template as soon as possible.

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