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modules.json
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modules.json
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{
"name": "nf-core/atacseq",
"homePage": "https://github.com/nf-core/atacseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"ataqv/ataqv": {
"branch": "master",
"git_sha": "11c7e5b3073845889060c793786bf3177275d62e",
"installed_by": ["modules"]
},
"ataqv/mkarv": {
"branch": "master",
"git_sha": "11c7e5b3073845889060c793786bf3177275d62e",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "fe54581f8bed20e4c4a51c616c93fd3379d89820",
"installed_by": ["fastq_align_bowtie2"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "6a24fbe314bb2e6fe6306c29a63076ea87e8eb3c",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["fastq_align_bwa"]
},
"chromap/chromap": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["fastq_align_chromap"]
},
"chromap/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"deeptools/computematrix": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"deeptools/plotfingerprint": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"deeptools/plotheatmap": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"deeptools/plotprofile": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "bd8092b67b5103bdd52e300f75889442275c3117",
"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"gffread": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "e06548bfa36ee31869b81041879dd6b3a83b1d57",
"installed_by": ["modules"]
},
"homer/annotatepeaks": {
"branch": "master",
"git_sha": "ffc27c68870f5f67e541bb67d94e03c597f75257",
"installed_by": ["modules"]
},
"khmer/uniquekmers": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"macs2/callpeak": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
"installed_by": ["bam_markduplicates_picard"]
},
"picard/mergesamfiles": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/flagstat": {
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"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
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"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
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"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools"]
},
"samtools/sort": {
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"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
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"installed_by": ["bam_stats_samtools"]
},
"subread/featurecounts": {
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},
"trimgalore": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"ucsc/bedgraphtobigwig": {
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},
"umitools/extract": {
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"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"untar": {
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"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
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"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
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},
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"installed_by": ["fastq_align_bowtie2", "fastq_align_bwa", "fastq_align_chromap"]
},
"bam_stats_samtools": {
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"installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools"]
},
"fastq_align_bowtie2": {
"branch": "master",
"git_sha": "fe54581f8bed20e4c4a51c616c93fd3379d89820",
"installed_by": ["subworkflows"]
},
"fastq_align_bwa": {
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"installed_by": ["subworkflows"]
},
"fastq_align_chromap": {
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"installed_by": ["subworkflows"]
},
"fastq_fastqc_umitools_trimgalore": {
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"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": ["subworkflows"]
}
}
}
}
}
}