cleanup

Signed-off-by: Ben Sherman <bentshermann@gmail.com>

README.md

@@ -103,7 +103,7 @@ An alternative method to build and test the plugin for development purposes:
 make install
 
 # run with regular nextflow install
-nextflow run tests/test.nf
+nextflow run tests/test.nf -plugins nf-prov@<version>
 ```
 
 ## Package, Upload, and Publish

tests/nextflow.config

@@ -23,10 +23,22 @@ prov {
         wrroc {
             file = "${params.outdir}/ro-crate-metadata.json"
             overwrite = true
+            license = "https://spdx.org/licenses/Apache-2.0"
         }
     }
 }
 
 manifest {
+    name = "nf-prov-test"
+    contributors = [
+        [name: "Bruno Grande", contribution: ["AUTHOR"]],
+        [name: "Ben Sherman", contribution: ["MAINTAINER"]],
+        [name: "Stephen Kelly", contribution: ["CONTRIBUTOR"]]
+    ]
+    homePage = "https://github.com/nextflow-io/nf-prov"
+    description = "Test pipeline for nf-prov"
+    mainScript = "test.nf"
+    nextflowVersion = "!>=24.10.0"
+    version = "0.3.0"
     license = "https://spdx.org/licenses/Apache-2.0"
 }

tests/test.nf

@@ -1,45 +1,42 @@
-nextflow.enable.dsl=2
 
-process RNG {
+params.constant = "foo"
+
+process ECHO_SCRIPT {
     tag "${prefix}"
-    publishDir "${params.outdir}", mode: 'copy'
+    publishDir params.outdir, mode: 'copy'
 
     input:
     tuple val(prefix), val(constant)
 
     output:
-    tuple val(prefix), val(constant), emit: 'values'
-    path "*.txt", emit: 'file'
+    tuple val(prefix), val(constant), path("*.txt")
 
     script:
     """
     echo \$RANDOM > ${prefix}.${constant}.1.txt
     echo \$RANDOM > ${prefix}.${constant}.2.txt
     """
-
 }
 
-// shows nf-prov behavior with exec tasks
-process EXEC_FOO {
+process ECHO_EXEC {
     tag "${prefix}"
-    publishDir "${params.outdir}", mode: 'copy'
+    publishDir params.outdir, mode: 'copy'
 
     input:
     tuple val(prefix), val(constant)
 
     output:
-    path(outputfile), emit: "txt"
+    path(outfile), emit: txt
 
     exec:
-    outputfile = task.workDir.resolve("${prefix}.exec_foo.txt")
-    outputfile.write(prefix)
+    outfile = "${prefix}.exec.txt"
+    task.workDir.resolve(outfile).write(prefix)
 }
 
 workflow {
     prefixes_ch = channel.from('r1', 'r2', 'r3')
     constant_ch = channel.of(params.constant)
     inputs_ch   = prefixes_ch.combine(constant_ch)
-    RNG(inputs_ch)
-    RNG.output.values.view()
-    EXEC_FOO(inputs_ch)
+    ECHO_SCRIPT(inputs_ch)
+    ECHO_EXEC(inputs_ch)
 }