KBM manuscript edits

neurogenomics · Jun 10, 2024 · f7cdf5e · f7cdf5e
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diff --git a/_freeze/.DS_Store b/_freeze/.DS_Store
diff --git a/_freeze/index/.DS_Store b/_freeze/index/.DS_Store
diff --git a/_freeze/manuscript/execute-results/docx.json b/_freeze/manuscript/execute-results/docx.json
diff --git a/_freeze/manuscript/execute-results/html.json b/_freeze/manuscript/execute-results/html.json
diff --git a/_freeze/manuscript/execute-results/tex.json b/_freeze/manuscript/execute-results/tex.json
diff --git a/_freeze/manuscript/figure-docx/fig-checks-1.png b/_freeze/manuscript/figure-docx/fig-checks-1.png
diff --git a/_freeze/manuscript/figure-docx/fig-congenital-branches-1.png b/_freeze/manuscript/figure-docx/fig-congenital-branches-1.png
diff --git a/_freeze/manuscript/figure-docx/fig-consist-vs-ontLvl-1.png b/_freeze/manuscript/figure-docx/fig-consist-vs-ontLvl-1.png
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diff --git a/_freeze/manuscript/figure-docx/fig-severity-boxplot-1.png b/_freeze/manuscript/figure-docx/fig-severity-boxplot-1.png
diff --git a/_freeze/manuscript/figure-docx/fig-severity-class-1.png b/_freeze/manuscript/figure-docx/fig-severity-class-1.png
diff --git a/_freeze/manuscript/figure-docx/fig-severity-histo-1.png b/_freeze/manuscript/figure-docx/fig-severity-histo-1.png
diff --git a/_freeze/manuscript/figure-docx/fig-top-phenos-1.png b/_freeze/manuscript/figure-docx/fig-top-phenos-1.png
diff --git a/_freeze/manuscript/figure-html/fig-consist-vs-ontLvl-1.png b/_freeze/manuscript/figure-html/fig-consist-vs-ontLvl-1.png
diff --git a/_freeze/manuscript/figure-html/fig-severity-boxplot-1.png b/_freeze/manuscript/figure-html/fig-severity-boxplot-1.png
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diff --git a/_freeze/manuscript/figure-html/fig-severity-histo-1.png b/_freeze/manuscript/figure-html/fig-severity-histo-1.png
diff --git a/_freeze/manuscript/figure-html/fig-top-phenos-1.png b/_freeze/manuscript/figure-html/fig-top-phenos-1.png
diff --git a/_freeze/manuscript/figure-pdf/fig-checks-1.pdf b/_freeze/manuscript/figure-pdf/fig-checks-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-congenital-branches-1.pdf b/_freeze/manuscript/figure-pdf/fig-congenital-branches-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-consist-vs-ontLvl-1.pdf b/_freeze/manuscript/figure-pdf/fig-consist-vs-ontLvl-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-metric-corplot-1.pdf b/_freeze/manuscript/figure-pdf/fig-metric-corplot-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-occurrence-1.pdf b/_freeze/manuscript/figure-pdf/fig-occurrence-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-severity-boxplot-1.pdf b/_freeze/manuscript/figure-pdf/fig-severity-boxplot-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-severity-class-1.pdf b/_freeze/manuscript/figure-pdf/fig-severity-class-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-severity-histo-1.pdf b/_freeze/manuscript/figure-pdf/fig-severity-histo-1.pdf
diff --git a/_freeze/manuscript/figure-pdf/fig-top-phenos-1.pdf b/_freeze/manuscript/figure-pdf/fig-top-phenos-1.pdf
diff --git a/_freeze/notebooks/.DS_Store b/_freeze/notebooks/.DS_Store
diff --git a/_freeze/notebooks/explore-earthquakes/execute-results/html.json b/_freeze/notebooks/explore-earthquakes/execute-results/html.json
diff --git a/_freeze/notebooks/explore-earthquakes/figure-html/fig-spatial-plot-1.png b/_freeze/notebooks/explore-earthquakes/figure-html/fig-spatial-plot-1.png
diff --git a/_quarto.yml b/_quarto.yml
@@ -12,13 +12,10 @@ format:
     toc: true
     comments:
       hypothesis: true
-  # docx: 
-  #   notebook-links: false
+#  docx: 
+#    notebook-links: false
   agu-pdf: 
     dpi: 200
     notebook-links: false
     header-includes:
       - \usepackage{annotate-equations}
-
-
-
diff --git a/docs/_tex/manuscript.tex b/docs/_tex/manuscript.tex
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-checks-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-checks-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-congenital-branches-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-congenital-branches-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-consist-vs-ontLvl-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-consist-vs-ontLvl-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-metric-corplot-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-metric-corplot-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-occurrence-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-occurrence-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-severity-boxplot-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-severity-boxplot-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-severity-class-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-severity-class-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-severity-histo-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-severity-histo-1.pdf
diff --git a/docs/_tex/manuscript_files/figure-pdf/fig-top-phenos-1.pdf b/docs/_tex/manuscript_files/figure-pdf/fig-top-phenos-1.pdf
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/manuscript-preview.html b/docs/manuscript-preview.html