diff --git a/DESCRIPTION b/DESCRIPTION index 8fb8004..525efb7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: tMAE Title: Tests and visualizes for Mono-allelic expressed variants -Version: 1.0.0 +Version: 1.0.1 Authors@R: c( person(given = "Vicente", family = "Yepez", diff --git a/R/add_gnomAD_AF.R b/R/add_gnomAD_AF.R index 303750b..4e48ef3 100644 --- a/R/add_gnomAD_AF.R +++ b/R/add_gnomAD_AF.R @@ -56,10 +56,7 @@ add_gnomAD_AF <- function(data, # Compute the MAX_AF (why do we change col names?) if(any(c("AF", "AF_popmax") %in% colnames(res))){ - if("AF_popmax" %in% colnames(res)){ - res[,MAX_AF:=AF_popmax] - } else { - res[,MAX_AF:=AF] + res$MAX_AF <- apply(res[, ..populations], 1, max, na.rm = T) } # Replace Inf with NA