diff --git a/unipressed/dataset/generated_types/uniparc.py b/unipressed/dataset/generated_types/uniparc.py index 9dcf220..b6f440c 100644 --- a/unipressed/dataset/generated_types/uniparc.py +++ b/unipressed/dataset/generated_types/uniparc.py @@ -128,6 +128,8 @@ class UniparcQueryDict(TypedDict): "Feature ID\ne.g. IPR004251" proteomecomponent: NotRequired[str] "Proteome Component\ne.g. chromosome" + organism_id: NotRequired[int] + "Organism ID\ne.g. 10254" UniparcQuery: TypeAlias = Union[UniparcQueryDict, str] diff --git a/unipressed/dataset/generated_types/uniprotkb.py b/unipressed/dataset/generated_types/uniprotkb.py index faa30d2..26ca202 100644 --- a/unipressed/dataset/generated_types/uniprotkb.py +++ b/unipressed/dataset/generated_types/uniprotkb.py @@ -728,7 +728,6 @@ class UniprotkbQueryDict(TypedDict): UniprotkbProteinFamilygroup: TypeAlias = Literal[ "xref_allergome", "xref_cazy", - "xref_clae", "xref_esther", "xref_imgt_gene-db", "xref_merops", @@ -755,19 +754,11 @@ class UniprotkbQueryDict(TypedDict): "xref_alzforum", "xref_biomuta", "xref_dmdm", "xref_dbsnp" ] UniprotkbTwodGel: TypeAlias = Literal[ - "xref_compluyeast-2dpage", - "xref_dosac-cobs-2dpage", - "xref_ogp", - "xref_reproduction-2dpage", - "xref_swiss-2dpage", - "xref_ucd-2dpage", - "xref_world-2dpage", + "xref_compluyeast-2dpage", "xref_ogp", "xref_reproduction-2dpage" ] UniprotkbProteomic: TypeAlias = Literal[ "xref_cptac", - "xref_epd", "xref_massive", - "xref_maxqb", "xref_pride", "xref_paxdb", "xref_peptideatlas", @@ -841,7 +832,6 @@ class UniprotkbQueryDict(TypedDict): "xref_genetree", "xref_hogenom", "xref_inparanoid", - "xref_ko", "xref_oma", "xref_orthodb", "xref_phylomedb", @@ -875,11 +865,7 @@ class UniprotkbQueryDict(TypedDict): "xref_emind", ] UniprotkbGeneExpression: TypeAlias = Literal[ - "xref_bgee", - "xref_cleanex", - "xref_collectf", - "xref_expressionatlas", - "xref_genevisible", + "xref_bgee", "xref_cleanex", "xref_collectf", "xref_expressionatlas" ] UniprotkbFamilyAndDomain: TypeAlias = Literal[ "xref_cdd", diff --git a/unipressed/dataset/generated_types/uniref.py b/unipressed/dataset/generated_types/uniref.py index 3430d8d..832ee52 100644 --- a/unipressed/dataset/generated_types/uniref.py +++ b/unipressed/dataset/generated_types/uniref.py @@ -47,7 +47,7 @@ class UnirefQueryDict(TypedDict): ] ] "Sequence length\ne.g. [100 TO 300]" - created: NotRequired[ + date_modified: NotRequired[ tuple[ Union[ date, @@ -59,7 +59,7 @@ class UnirefQueryDict(TypedDict): ], ] ] - "Date published\ne.g. [2011-10-10 TO 2019-10-10]" + "Date of last modification\ne.g. [2011-10-10 TO 2019-10-10]" uniprot_id: NotRequired[str] "UniProtKB ID/AC\ne.g. sample uniprot id" upi: NotRequired[str] @@ -78,7 +78,7 @@ class UnirefQueryDict(TypedDict): ] UnirefSequences: TypeAlias = Literal["identity", "length", "sequence"] UnirefMiscellaneous: TypeAlias = Literal["types", "members", "count"] -UnirefDateOf: TypeAlias = Literal["created",] +UnirefDateOf: TypeAlias = Literal["date_modified",] UnirefFields: TypeAlias = Literal[ UnirefNamesTaxonomy, UnirefSequences, UnirefMiscellaneous, UnirefDateOf ]