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Cenote-Taker 2 Version 2.1.3
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@mtisza1 mtisza1 released this 16 Jun 14:26
· 55 commits to master since this release
v2.1.3
4a6e11e

Downloading the binaries will not help you to set up Cenote-Taker 2. If you haven't already installed Cenote-Taker 2, please follow installation instructions in README. If you have already installed it and you are updating from v2.1.1 or earlier, please do:

conda activate cenote-taker2_env
conda install -c bioconda biopython bedtools
cd Cenote-Taker2
git pull

If you are updating from v2.1.2:

conda activate cenote-taker2_env
git pull

Anyone doing the update should also update the HMM database!
Thank you.

Update notes:

  1. ITR sequencing are now getting annotated correctly.
  2. Problems with very large (many contigs) datasets should be resolved. There were previously some issues with find commands and argument list length.
  3. New HMMs for RNA-dependent RNA polymerase genes (7 new HMMs) have been added to the hallmark database. Thanks to Darren Obbard.

Best,

Mike

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