Merge pull request #25 from ajmaurais/dia_qc_bug_fix

Fix bug with qc_report PC analysis
mriffle · Nov 1, 2024 · eaf4feb · eaf4feb
2 parents 32b7b00 + cea2a91
commit eaf4feb
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diff --git a/.github/workflows/push-stub-run.yml b/.github/workflows/push-stub-run.yml
@@ -27,6 +27,7 @@ jobs:
     - name: Run (${{ matrix.config }})
       run: |
         echo "Installing Nextflow:"
+        export NXF_VER=24.04.4   # Specify nextflow version. Currently there is a bug in 24.10.0
         curl -s https://get.nextflow.io | bash
         chmod +x nextflow
         echo "Running Nextflow stub with config: ${{ matrix.config }}"

diff --git a/container_images.config b/container_images.config
@@ -7,7 +7,7 @@ params {
         pdc_client:            'quay.io/mauraisa/pdc_client:0.15',
         encyclopedia:          'quay.io/protio/encyclopedia:2.12.30-2',
         encyclopedia3_mriffle: 'quay.io/protio/encyclopedia:3.0.0-MRIFFLE',
-        qc_pipeline:           'quay.io/mauraisa/dia_qc_report:2.2.4',
+        qc_pipeline:           'quay.io/mauraisa/dia_qc_report:2.2.5',
         proteowizard:          'quay.io/protio/pwiz-skyline-i-agree-to-the-vendor-licenses:3.0.24172-63d00b1'
     ]
 }