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Welcome to LAMA, an open source pipeline to automatically identify embryo dysmorphology from 3D volumetric images. Can also be applied to other 3D datasets with homology.
It was originally developed for use with whole-embryo ct scans of knockout mice originating from the International Mice Phenotyping Consortium (http://www.mousephenotype.org), but has been shown to work with other data types such as HREM.
This software was developed by Neil Horner in the Bioimage Informatics Group at MRC Harwell UK (https://www.har.mrc.ac.uk) under the supervision of Henrik Westerberg.
If you have any questions or comments, please contact us at bit@har.mrc.ac.uk
Look at the following sections for instructions on how to use LAMA