Stacked oncoplots

[rdmorin]

Pull Request Checklists

This is a massive extension to the prettyOncoplot functionality. Fairly thoroughly tested but more testing would be appreciated!

Checklist for all PRs

Required

• I ensured not to prepend the functions existing in both GAMBLR.data and GAMBLR.results with <package>::function() syntax.
• I ensured not to add GAMBLR.data or GAMBLR.results to the @import section of the documentation

[Kdreval]

Thanks!
I think all looks good - just missing a few documentation updates. I think this is the most relevant part from the check:

❯ checking Rd \usage sections ... WARNING
  Documented arguments not in \usage in documentation object 'map_metadata_to_colours':
    ‘as_vector’
  
  Undocumented arguments in documentation object 'prettyOncoplot'
    ‘numeric_heatmap_type’ ‘numeric_heatmap_location’
  

Let me know if I should fix those 😄