website: data quality tutorial

docs/concepts/GAMBLR_family.html

@@ -106,6 +106,10 @@
         <li>
     <a class="dropdown-item" href="../faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../tutorials/forestplot.html" rel="" target="">

docs/concepts/glossary.html

@@ -103,6 +103,10 @@
         <li>
     <a class="dropdown-item" href="../faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../tutorials/forestplot.html" rel="" target="">

docs/faq.html

@@ -103,6 +103,10 @@
         <li>
     <a class="dropdown-item" href="./faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./tutorials/forestplot.html" rel="" target="">
@@ -212,6 +216,12 @@
   <a href="./faq.html" class="sidebar-item-text sidebar-link active">
  <span class="menu-text">Frequently Asked Qestions</span></a>
   </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./tutorials/data_q.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Tutorial: Exploring data quality</span></a>
+  </div>
 </li>
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 

docs/index.html

@@ -137,6 +137,10 @@
         <li>
     <a class="dropdown-item" href="./faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./tutorials/forestplot.html" rel="" target="">

docs/install.html

@@ -133,6 +133,10 @@
         <li>
     <a class="dropdown-item" href="./faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./tutorials/forestplot.html" rel="" target="">
@@ -242,6 +246,12 @@
   <a href="./faq.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Frequently Asked Qestions</span></a>
   </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./tutorials/data_q.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Tutorial: Exploring data quality</span></a>
+  </div>
 </li>
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 

docs/resources/contributing.html

@@ -20,6 +20,40 @@
   margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ 
   vertical-align: middle;
 }
+/* CSS for syntax highlighting */
+pre > code.sourceCode { white-space: pre; position: relative; }
+pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
+pre > code.sourceCode > span:empty { height: 1.2em; }
+.sourceCode { overflow: visible; }
+code.sourceCode > span { color: inherit; text-decoration: inherit; }
+div.sourceCode { margin: 1em 0; }
+pre.sourceCode { margin: 0; }
+@media screen {
+div.sourceCode { overflow: auto; }
+}
+@media print {
+pre > code.sourceCode { white-space: pre-wrap; }
+pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
+}
+pre.numberSource code
+  { counter-reset: source-line 0; }
+pre.numberSource code > span
+  { position: relative; left: -4em; counter-increment: source-line; }
+pre.numberSource code > span > a:first-child::before
+  { content: counter(source-line);
+    position: relative; left: -1em; text-align: right; vertical-align: baseline;
+    border: none; display: inline-block;
+    -webkit-touch-callout: none; -webkit-user-select: none;
+    -khtml-user-select: none; -moz-user-select: none;
+    -ms-user-select: none; user-select: none;
+    padding: 0 4px; width: 4em;
+  }
+pre.numberSource { margin-left: 3em;  padding-left: 4px; }
+div.sourceCode
+  {   }
+@media screen {
+pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
+}
 </style>
 
 
@@ -103,6 +137,10 @@
         <li>
     <a class="dropdown-item" href="../faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../tutorials/forestplot.html" rel="" target="">
@@ -251,12 +289,12 @@ <h1 class="title">Contribution guidelines</h1>
 <section id="cloning-repo-for-the-code-development" class="level2">
 <h2 class="anchored" data-anchor-id="cloning-repo-for-the-code-development">Cloning repo for the code development</h2>
 <p>The easiest way to obtain and contribute to GAMBLR.viz is to do this via cloning the repository</p>
-<pre><code>cd
-git clone git@github.com:morinlab/GAMBLR.viz.git</code></pre>
+<div class="sourceCode" id="cb1"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="bu">cd</span></span>
+<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">git</span> clone git@github.com:morinlab/GAMBLR.viz.git</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>In your R editor of choice, set your working directory to the place you just cloned the repo.</p>
-<pre><code>setwd("~/GAMBLR.viz")</code></pre>
+<div class="sourceCode" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="fu">setwd</span>(<span class="st">"~/GAMBLR.viz"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>Install the package in R by running the following command (requires the devtools package)</p>
-<pre><code>devtools::install()</code></pre>
+<div class="sourceCode" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a>devtools<span class="sc">::</span><span class="fu">install</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>As GAMBL users (GAMBLRs, so to speak) rely on the functionality of this package, the Master branch is protected. All commits must be submitted via pull request on a branch. Please refer to the <a href="https://github.com/morinlab/gambl#contribution-guidelines">GAMBL</a> documentation for details on how to do this.</p>
 </section>
 <section id="function-conflicts" class="level2">

docs/resources/contributing.qmd

@@ -8,22 +8,22 @@ title: "Contribution guidelines"
 The easiest way to obtain and contribute to GAMBLR.viz is to do this via cloning
 the repository
 
-```
+```bash
 cd
 git clone git@github.com:morinlab/GAMBLR.viz.git
 ```
 
 In your R editor of choice, set your working directory to the place you just
 cloned the repo.
 
-```
+```r
 setwd("~/GAMBLR.viz")
 ```
 
 Install the package in R by running the following command (requires the devtools
 package)
 
-```
+```r
 devtools::install()
 ```
 

docs/resources/functions.html

@@ -103,6 +103,10 @@
         <li>
     <a class="dropdown-item" href="../faq.html" rel="" target="">
  <span class="dropdown-text">Frequently Asked Qestions</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../tutorials/data_q.html" rel="" target="">
+ <span class="dropdown-text">Tutorial: Exploring data quality</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../tutorials/forestplot.html" rel="" target="">