From 8c7ced87bf6d9a338201a2a906858fc74b986f9a Mon Sep 17 00:00:00 2001
From: Kdreval <k.dreval@gmail.com>
Date: Thu, 14 Mar 2024 17:32:43 -0700
Subject: [PATCH] bug fix: add cbioportal to recipe

---
 envs/r.yaml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/envs/r.yaml b/envs/r.yaml
index 3ef73b3..9ee6629 100644
--- a/envs/r.yaml
+++ b/envs/r.yaml
@@ -21,6 +21,7 @@ dependencies:
   - fontconfig=2.14.2
   - fonts-anaconda=1
   - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
   - freetype=2.12.1
   - fribidi=1.0.10
   - gcc_impl_linux-64=11.2.0
@@ -31,6 +32,7 @@ dependencies:
   - harfbuzz=8.3.0
   - icu=73.2
   - kernel-headers_linux-64=2.6.32
+  - keyutils=1.6.1
   - krb5=1.20.1
   - ld_impl_linux-64=2.38
   - lerc=4.0.0
@@ -39,6 +41,7 @@ dependencies:
   - libdeflate=1.19
   - libedit=3.1.20230828
   - libev=4.33
+  - libexpat=2.5.0
   - libffi=3.4.4
   - libgcc-devel_linux-64=11.2.0
   - libgcc-ng=13.2.0
@@ -70,9 +73,12 @@ dependencies:
   - pango=1.52.0
   - pcre2=10.42
   - pixman=0.43.2
+  - pthread-stubs=0.4
   - r-askpass=1.2.0
+  - r-assertthat=0.2.1
   - r-base=4.3.3
   - r-base64enc=0.1_3
+  - r-biocmanager=1.30.22
   - r-brew=1.0_8
   - r-brio=1.1.3
   - r-bslib=0.5.1
@@ -176,6 +182,8 @@ dependencies:
   - xorg-libice=1.1.1
   - xorg-libsm=1.2.4
   - xorg-libx11=1.8.7
+  - xorg-libxau=1.0.11
+  - xorg-libxdmcp=1.1.3
   - xorg-libxext=1.3.4
   - xorg-libxrender=0.9.11
   - xorg-libxt=1.3.0