From 7c6d656aca1d4af4ca37bf4e2e490342eade98c4 Mon Sep 17 00:00:00 2001 From: Kdreval Date: Mon, 8 Jul 2024 18:07:57 -0700 Subject: [PATCH] bug fix: testing working env on actions --- envs/r.yaml | 226 +++++++++++++++++++++++++++++----------------------- 1 file changed, 127 insertions(+), 99 deletions(-) diff --git a/envs/r.yaml b/envs/r.yaml index c6af660..9836904 100644 --- a/envs/r.yaml +++ b/envs/r.yaml @@ -1,190 +1,218 @@ name: r channels: - - r - conda-forge - defaults dependencies: - _libgcc_mutex=0.1 - _openmp_mutex=4.5 - - _r-mutex=1.0.0 - - binutils_impl_linux-64=2.38 - - bwidget=1.9.16 + - _r-mutex=1.0.1 + - binutils_impl_linux-64=2.40 + - binutils_linux-64=2.40 + - bwidget=1.9.14 - bzip2=1.0.8 - - c-ares=1.19.1 - - ca-certificates=2024.3.11 - - cairo=1.18.0 - - curl=8.5.0 - - expat=2.5.0 + - c-ares=1.28.1 + - ca-certificates=2024.7.4 + - cairo=1.16.0 + - cmake=3.30.0 + - curl=8.8.0 + - expat=2.6.2 - font-ttf-dejavu-sans-mono=2.37 - - font-ttf-inconsolata=2.001 - - font-ttf-source-code-pro=2.030 + - font-ttf-inconsolata=3.000 + - font-ttf-source-code-pro=2.038 - font-ttf-ubuntu=0.83 - fontconfig=2.14.2 - - fonts-anaconda=1 - fonts-conda-ecosystem=1 - fonts-conda-forge=1 - freetype=2.12.1 - fribidi=1.0.10 - - gcc_impl_linux-64=11.2.0 - - gettext=0.21.0 - - gfortran_impl_linux-64=11.2.0 - - graphite2=1.3.14 - - gxx_impl_linux-64=11.2.0 - - harfbuzz=8.3.0 - - icu=73.2 + - gcc_impl_linux-64=13.2.0 + - gcc_linux-64=13.2.0 + - gettext=0.22.5 + - gettext-tools=0.22.5 + - gfortran_impl_linux-64=13.2.0 + - graphite2=1.3.13 + - gsl=2.7 + - gxx_impl_linux-64=13.2.0 + - harfbuzz=7.3.0 + - icu=72.1 - kernel-headers_linux-64=2.6.32 - keyutils=1.6.1 - - krb5=1.20.1 - - ld_impl_linux-64=2.38 + - krb5=1.21.3 + - ld_impl_linux-64=2.40 - lerc=4.0.0 + - libasprintf=0.22.5 + - libasprintf-devel=0.22.5 - libblas=3.9.0 - - libcurl=8.5.0 - - libdeflate=1.19 - - libedit=3.1.20230828 + - libcblas=3.9.0 + - libcurl=8.8.0 + - libdeflate=1.18 + - libedit=3.1.20191231 - libev=4.33 - - libexpat=2.5.0 - - libffi=3.4.4 - - libgcc-devel_linux-64=11.2.0 - - libgcc-ng=13.2.0 - - libgfortran-ng=11.2.0 - - libgfortran5=11.2.0 - - libgit2=1.6.4 - - libglib=2.78.4 - - libgomp=13.2.0 + - libexpat=2.6.2 + - libffi=3.4.2 + - libgcc-devel_linux-64=13.2.0 + - libgcc-ng=14.1.0 + - libgettextpo=0.22.5 + - libgettextpo-devel=0.22.5 + - libgfortran-ng=14.1.0 + - libgfortran5=14.1.0 + - libgit2=1.5.1 + - libglib=2.78.1 + - libgomp=14.1.0 - libiconv=1.17 - - libjpeg-turbo=3.0.0 + - libjpeg-turbo=2.1.5.1 - liblapack=3.9.0 - - libnghttp2=1.57.0 - - libopenblas=0.3.21 + - libnghttp2=1.58.0 + - libnsl=2.0.1 + - libopenblas=0.3.27 - libpng=1.6.43 - - libssh2=1.10.0 - - libstdcxx-devel_linux-64=11.2.0 - - libstdcxx-ng=13.2.0 - - libtiff=4.6.0 + - libsanitizer=13.2.0 + - libsqlite=3.46.0 + - libssh2=1.11.0 + - libstdcxx-devel_linux-64=13.2.0 + - libstdcxx-ng=14.1.0 + - libtiff=4.5.1 - libuuid=2.38.1 - - libwebp-base=1.3.2 + - libuv=1.48.0 + - libwebp-base=1.4.0 - libxcb=1.15 - - libxml2=2.10.4 - - libzlib=1.2.13 - - lz4-c=1.9.4 - - make=4.2.1 - - ncurses=6.4.20240210 - - openssl=3.0.13 - - pandoc=2.12 - - pango=1.52.0 - - pcre2=10.42 + - libxcrypt=4.4.36 + - libxml2=2.11.5 + - libzlib=1.3.1 + - make=4.3 + - mysql-common=8.3.0 + - mysql-connector-c=6.1.11 + - mysql-libs=8.3.0 + - mysqlclient=2.2.4 + - ncurses=6.5 + - openssl=3.3.1 + - pandoc=2.19.2 + - pango=1.50.14 + - pcre2=10.40 + - pip=24.0 - pixman=0.43.2 - - pthread-stubs=0.3 - - r-askpass=1.2.0 + - pthread-stubs=0.4 + - python=3.12.4 + - python_abi=3.12 + - r-askpass=1.1 - r-assertthat=0.2.1 - - r-base=4.3.3 + - r-backports=1.4.1 + - r-base=4.1.3 - r-base64enc=0.1_3 + - r-biocmanager=1.30.21 - r-brew=1.0_8 - r-brio=1.1.3 - - r-bslib=0.5.1 + - r-bslib=0.5.0 - r-cachem=1.0.8 - r-callr=3.7.3 - r-cli=3.6.1 - r-clipr=0.8.0 - r-commonmark=1.9.0 - - r-cpp11=0.4.6 + - r-cpp11=0.4.7 - r-crayon=1.5.2 - - r-credentials=2.0.1 - - r-curl=5.1.0 + - r-credentials=1.3.2 + - r-curl=4.3.3 + - r-dbi=1.1.3 - r-desc=1.4.2 - r-devtools=2.4.5 - r-diffobj=0.3.5 - - r-digest=0.6.33 - - r-downlit=0.4.3 + - r-digest=0.6.31 + - r-downlit=0.4.2 - r-ellipsis=0.3.2 - - r-evaluate=0.22 - - r-fansi=1.0.5 + - r-evaluate=0.21 + - r-fansi=1.0.4 - r-fastmap=1.1.1 - - r-fontawesome=0.5.2 - - r-fs=1.6.3 - - r-gert=2.0.0 + - r-fontawesome=0.5.1 + - r-fs=1.6.2 + - r-gert=1.9.2 - r-gh=1.4.0 + - r-git2r=0.31.0 - r-gitcreds=0.1.2 - r-glue=1.6.2 - r-highr=0.10 - - r-htmltools=0.5.6.1 + - r-htmltools=0.5.5 - r-htmlwidgets=1.6.2 - r-httpuv=1.6.11 - - r-httr=1.4.7 + - r-httr=1.4.6 - r-httr2=0.2.3 - r-ini=0.3.1 - r-jquerylib=0.1.4 - - r-jsonlite=1.8.7 - - r-knitr=1.44 + - r-jsonlite=1.8.5 + - r-knitr=1.43 - r-later=1.3.1 - - r-lattice=0.22_5 + - r-lattice=0.21_8 - r-lifecycle=1.0.3 - r-magrittr=2.0.3 - - r-mass=7.3_60 - - r-matrix=1.6_1.1 + - r-mass=7.3_58.3 + - r-matrix=1.5_4.1 - r-memoise=2.0.1 - r-mime=0.12 - r-miniui=0.1.1.1 - - r-openssl=2.1.1 + - r-openssl=2.0.6 - r-pillar=1.9.0 - - r-pkgbuild=1.4.2 + - r-pkgbuild=1.4.0 - r-pkgconfig=2.0.3 - r-pkgdown=2.0.7 - - r-pkgload=1.3.3 + - r-pkgload=1.3.2 - r-praise=1.0.0 - - r-prettyunits=1.2.0 - - r-processx=3.8.2 + - r-prettyunits=1.1.1 + - r-processx=3.8.1 - r-profvis=0.3.8 - - r-promises=1.2.1 + - r-promises=1.2.0.1 - r-ps=1.7.5 - - r-purrr=1.0.2 + - r-purrr=1.0.1 - r-r6=2.5.1 - - r-ragg=1.2.6 + - r-ragg=1.2.5 - r-rappdirs=0.3.3 - r-rcmdcheck=1.4.0 - - r-rcpp=1.0.11 + - r-rcpp=1.0.10 - r-rematch2=2.1.2 - - r-remotes=2.4.2.1 + - r-remotes=2.4.2 - r-rlang=1.1.1 - - r-rmarkdown=2.25 + - r-rmarkdown=2.22 + - r-rmysql=0.10.25 - r-roxygen2=7.2.3 - r-rprojroot=2.0.3 - - r-rstudioapi=0.15.0 + - r-rstudioapi=0.14 - r-rversions=2.1.2 - - r-sass=0.4.7 + - r-sass=0.4.6 - r-sessioninfo=1.2.2 - - r-shiny=1.7.5.1 + - r-shiny=1.7.4 - r-sourcetools=0.1.7_1 - r-stringi=1.7.12 - r-stringr=1.5.0 - r-sys=3.4.2 - - r-systemfonts=1.0.5 - - r-testthat=3.2.0 - - r-textshaping=0.3.7 + - r-systemfonts=1.0.4 + - r-testthat=3.1.8 + - r-textshaping=0.3.6 - r-tibble=3.2.1 - - r-tinytex=0.48 + - r-tinytex=0.45 - r-urlchecker=1.0.1 - - r-usethis=2.2.2 - - r-utf8=1.2.4 - - r-vctrs=0.6.4 + - r-usethis=2.2.0 + - r-utf8=1.2.3 + - r-vctrs=0.6.2 - r-waldo=0.5.1 - r-whisker=0.4.1 - - r-withr=2.5.1 - - r-xfun=0.40 - - r-xml2=1.3.5 + - r-withr=2.5.0 + - r-xfun=0.39 + - r-xml2=1.3.4 - r-xopen=1.0.0 - r-xtable=1.8_4 - r-yaml=2.3.7 - r-zip=2.3.0 - readline=8.2 + - rhash=1.4.4 - sed=4.8 + - setuptools=70.1.1 - sysroot_linux-64=2.12 - tk=8.6.13 - tktable=2.10 + - tzdata=2024a + - wheel=0.43.0 - xorg-kbproto=1.0.7 - xorg-libice=1.1.1 - xorg-libsm=1.2.4 - - xorg-libx11=1.8.7 + - xorg-libx11=1.8.9 - xorg-libxau=1.0.11 - xorg-libxdmcp=1.1.3 - xorg-libxext=1.3.4 @@ -193,6 +221,6 @@ dependencies: - xorg-renderproto=0.11.1 - xorg-xextproto=7.3.0 - xorg-xproto=7.0.31 - - xz=5.4.6 - - zlib=1.2.13 - - zstd=1.5.5 + - xz=5.2.6 + - zlib=1.3.1 + - zstd=1.5.6