Create phenopackets without phenotypic features #58
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yaseminbridges
approved these changes
Feb 27, 2025
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Summary
Adds the possibility of creating disease phenopackets without phenotypic features.
Rationale
This is particularly useful for benchmarking the PhenoDigm pipeline used in IMPC; it reduces the size of the phenopackets considering the phenotypic features of each disease are not needed for this purpose. This could be useful for other users.
Usage
This feature adds a new flag to
convert:--skip-phenotypic-features. When used, phenotypic features are not added to the phenopackets.