support MokaAMP

• Runs MokaAMP for any oncology panels (alongside mokaonc where appropriate)
• Points to new releases of multiqc,peddy and rpkm which use API kets from a new Nexus project.
• read release version from github
• update code with linting and comments
• send version of mokaamp via email
• fail gracefully if the samplesheet can't be opened

Use mokawes v1.4. change email account used. PEP8 code and import config file to UA script with alias

Merge pull request #228 from woook/v22

V22

Multiqc version to 1.6

Removed integrity check and cron jobs to own repos
Updated Multiqc version to 1.6 in config file

MokaWES v1.3

Merge pull request #221 from woook/mokawes1.3

mokawes v1.2 -> v1.3

MokaWES v1.2

Merge pull request #219 from woook/mokawes1.2

version 19 with mokawes1.2

Mokaonc v1.4 and works correctly if processing two runs in same execution

mokaonc v1.4 upgraded to use amplivar_blat v1.6

Update peddy version and add Pan1646

Merge pull request #211 from woook/development

Update peddy and add Pan1646

Update Pan numbers used

Add support for NGSEQ2 RPKM bedfile,
New CMCMD bed files
Pan number expected for new focused exome design

bug fix for custom panels without associated RPKM bed file

Merge pull request #203 from woook/development

bug fix if there is no CNV pan number

Use MokaWES1.1, Mokapipe 2.9, MokaONC v1.3

All apps have been updated to ubuntu 14.
A bug where the run was entered into smartsheet before the integrity test was complete was fixed.