Skip to content

v44.8.0
Compare
Choose a tag to compare
@rebeccahaines1 rebeccahaines1 released this 23 Oct 10:26
v44.8.0
c78c5eb
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

v44.8.0 incorporates the following:

  • The script now splits the TSO samplesheets and runs the pipeline multiple times, once per resulting split samplesheet
  • Updated TSO app (v1.6.0) (AUD1352) which contains to support the app being run multiple times for the same run, and to output files in a useful way for downstream processes
  • TSO post-run processing commands are now written to a separate bash script. This is because the --wait flag cannot be used to delay the running of the commands for the downstream apps when running multiple instances of the TSO app to process a single run
  • Updated duty CSV app (v1.2.0) (AUD1349) that has been updated to function with the added exome depth PDF output and the altered TSO output format
  • Add new pan numbers: Pan5186 and Pan5185 - APC Associated Polyposis, Pan5180 - development run (stops warning messages)
  • Amend scripts so that samplesheet checks do not run for runs containing samples with the development pan number
  • Incorporate new exome depth app which performs CNV calling using ExomeDepth - currently only running for VCP1 and VCP2 samples (not VCP3)
  • Remove no longer required pan numbers: Pan4127 (VCP2 Viapath R209 (colorectal) and Pan4818 (VCP2 STG R209 colorectal) as R209 has been removed from the test directory. Pan4044 (STG VCP1), Pan4042 (STG VCP2 BRCA), Pan4049 (STG VCP2 CrCa), Pan4043 (STG VCP3) which were generic pan numbers we used to use for StG but have been separated into individual Pan numbers
Assets 2
Loading