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v44.7.0
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@RachelDuffin RachelDuffin released this 09 Aug 13:42
v44.7.0
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v44.7.0 incorporates the following changes:

  • Update TSO500 coverage BED file to Pan5130
  • Fix TSO coverage report output folders to output to a folder per Pan number
  • Incorporate new MultiQC dnanexus app v1.18.0 to all pipelines (contains new MultiQC plugin for coverage that adds a coverage table for all samples with sambamba chanjo gene_level coverage files)
  • Update TSO500 dependency so that MultiQC depends on sambamba chanjo jobs (except NTC samples)
  • Switch to a dockerised version of bcl2fastq2
  • Fix email function - add correct email server username back into the script
  • Update incorrect RPKM VCP3 pan number (Pan3974 should be Pan4362)
  • Remove obsolete MokaCAN pipeline
  • Add new Pan numbers for R444.1 and R444.2
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