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@RachelDuffin RachelDuffin released this 24 Apr 13:33
v44.6.0
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This update incorporates the following changes:

  • Re-add peddy to multiqc depends list
  • Fix order of app dependency for TSO and Custom Panels pipelines (including addition of an extra dependency list for custom panels to stop multiqc depending on RPKM)
  • Add updated duty_csv app version
  • Remove non-required panel argument to fastqc command creation function
  • Exclude NTC sambamba job from depends list for TSO samples
  • Only add to depends_list if JOBID exists from the command for TSO fastqc sompy and sambamba
  • Add extra log command for writing dx run commands to file
  • Add support for R430 test indication (prostate panel) on VCP2
  • Update VCP2 variant calling, coverage and RPKM bed files
  • Add --priority flag to dx run commands that previously didn't have it
  • Specify dnanexus v2 instance types for peddy, multiqc, upload multiqc, RPKM and congenica upload commands
  • Increase timeout time on R134 runs from 6 to 12 hours
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