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@aledj2 aledj2 released this 26 Jul 14:04
v40.0.0
6b8687c
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Add support for MokaCAN v1.0
Update MokaAMP to v1.7 ( varscan variant callers to v1.3.2) which allows for samplename to be specified. This aids ainterpretation of multiple VCfs in one QCI analysis.
NA12878 samples are excluded form the congenica upload command
The demultiplex script has been changed to improve the logic around missing samplesheets.
The logic which counts the number of samples in the samplesheet (used to update smartsheet) has also been updated.
Update description of Pan4314 to R229 from R266 inn config
Update config.testing statement to allow for all testing variables to be easily replaced - this removes the now obsolete debug flag.
Update VCP3 bed file to add support for SNORD118
Create fastqc/multiqc report for OnePGT samples

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