WIP Draft JOSS Submission

.github/workflows/ci.yml

@@ -138,6 +138,26 @@ jobs:
       - run: docker build -t mmore500/signalgp-lite .
       - run: docker ps -a
       - run: sudo docker run --cap-add=SYS_ADMIN mmore500/signalgp-lite /bin/bash -c "cd /opt/signalgp-lite && make test"
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: joss
+          # This should be the path to the paper within your repo.
+          paper-path: joss/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v1
+        with:
+          name: paper
+          # This is the output path where Pandoc will write the compiled
+          # PDF. Note, this should be the same directory as the input
+          # paper.md
+          path: joss/paper.pdf
   deploy-github-pages:
     runs-on: ubuntu-18.04
     name: Deploy to GitHub Pages
@@ -152,6 +172,7 @@ jobs:
       - microbenchmarks
       - source-clang
       - source-gcc
+      - paper
     env:
       GH_TOKEN: ${{ github.token }}
     steps:

.gitmodules

@@ -1,22 +1,6 @@
-[submodule "third-party/Catch"]
-  path = third-party/Catch
-  url = https://github.com/philsquared/Catch.git
-[submodule "third-party/Empirical"]
-  path = third-party/Empirical
-  url = https://github.com/devosoft/Empirical.git
-  branch = master
-[submodule "third-party/force-cover"]
-  path = third-party/force-cover
-  url = https://github.com/emilydolson/force-cover.git
-[submodule "third-party/emsdk"]
-  path = third-party/emsdk
-  url = https://github.com/emscripten-core/emsdk.git
 [submodule "third-party/SignalGP"]
   path = third-party/SignalGP
   url = https://github.com/mmore500/SignalGP.git
-[submodule "third-party/cereal"]
-  path = third-party/cereal
-  url = https://github.com/mmore500/cereal.git
 [submodule "third-party/conduit"]
   path = third-party/conduit
   url = https://github.com/mmore500/conduit.git

Dockerfile

@@ -1,45 +1,14 @@
-FROM mmore500/conduit
+FROM mmore500/conduit@sha256:b1590176a947b3d3887470c3dee6d81243c7f05c9f81388bffd67b903586037f
 
 USER root
 
 COPY . /opt/signalgp-lite
 
-RUN \
-  apt-get install -qq \
-    python-virtualenv \
-    python3-virtualenv \
-    python-pip \
-    python3-pip \
-    doxygen \
-    && \
-  echo "installed docs dependencies"
-
 RUN \
   pip3 install -r /opt/signalgp-lite/docs/requirements.txt \
     && \
   echo "installed documentation build requirements"
 
-RUN \
-  add-apt-repository -y ppa:ubuntu-toolchain-r/test \
-    && \
-  wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add - \
-    && \
-  apt-add-repository "deb https://apt.llvm.org/xenial/ llvm-toolchain-xenial-7 main" \
-    && \
-  apt-get update -qq \
-    && \
-  apt-get install -y cmake build-essential python-virtualenv python-pip nodejs tar gzip libclang-7-dev llvm-7 clang-7 libstdc++-7-dev gdb \
-    && \
-  update-alternatives --install /usr/bin/clang++ clang++ /usr/bin/clang++-7 90 \
-    && \
-  update-alternatives --install /usr/bin/llvm-config llvm-config /usr/bin/llvm-config-7 90 \
-    && \
-  update-alternatives --install /usr/bin/llvm-profdata llvm-profdata /usr/bin/llvm-profdata-7 90 \
-    && \
-  update-alternatives --install /usr/bin/llvm-cov llvm-cov /usr/bin/llvm-cov-7 90 \
-    && \
-  echo "installed force cover build dependencies"
-
 # make sure unprivileged user has access to new files in opt
 # adapted from https://stackoverflow.com/a/27703359
 # and https://superuser.com/a/235398

README.md

@@ -2,6 +2,7 @@
 # signalgp-lite
 
 [![version](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmore500.github.io%2Fsignalgp-lite%2Fversion-badge.json)](https://github.com/mmore500/signalgp-lite/releases)
+[![Codacy Badge](https://app.codacy.com/project/badge/Grade/d4ec421f786a4d00bd850bf0d1719d5d)](https://www.codacy.com/gh/mmore500/signalgp-lite/dashboard?utm_source=github.com&utm_medium=referral&utm_content=mmore500/signalgp-lite&utm_campaign=Badge_Grade)
 [![continuous integration](https://github.com/mmore500/signalgp-lite/workflows/CI/badge.svg)](https://github.com/mmore500/signalgp-lite/actions?query=workflow%3ACI)
 [![Documentation Status](https://readthedocs.org/projects/signalgp-lite/badge/?version=latest)](https://signalgp-lite.readthedocs.io/en/latest/?badge=latest)
 [![documentation coverage](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmore500.github.io%2Fsignalgp-lite%2Fdocumentation-coverage-badge.json)](https://signalgp-lite.readthedocs.io/en/latest/)