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WIP Draft JOSS Submission#6

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mmore500 wants to merge 114 commits intomastermmore500/signalgp-lite:masterfrom jossmmore500/signalgp-lite:jossCopy head branch name to clipboard

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Commits

Commits on Apr 27, 2021

• Add joss boilerplate

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• Comment out dummy figure, citations

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Commits on Apr 28, 2021

• Replace tabs with spaces

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Commits on May 18, 2021

• Replace redundant submodules with symlinks

  

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• Replace emsdk subrepo with pinned install script

  

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• Replace force-cover with symlink

  

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• Bump conduit pin

  

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• Fix fuzzing compile-time error

  

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• Mark core virtual CPU methods noexcept

  

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• Bump conduit pin for noexcept

  

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• Remove redundant installs

  

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• Pin to specific Conduit image

  

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• Bump Emprical pin

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• Cite Alex's paper

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• Cite dishtiny papers

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• Add result titles to paper

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• Add figures to joss folder

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• Rename figures

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• Add two figures to paper

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• Remove newlines in picture figures

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Commits on May 19, 2021

• Fix paper header

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• Add Matthew's ORCID

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Commits on May 24, 2021

• More changes

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• Finish replication results

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• Outline abstract

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Commits on May 25, 2021

• Add summary and statement of need

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• Fix typos

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Commits on May 27, 2021

• Flesh out paper a bit more

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• Make library title stand out

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Commits on May 28, 2021

• Flesh our more stuff

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Commits on Jun 10, 2021

• Add benchmarking section

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• Add benchmarking figures

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• Bump conduit pin

  

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• Bump conduit pin

  

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• Mark script executable

  

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• Add codacy badge

  

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• Mark scripts executable

  

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• Bump conduit/Empirical

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• Bump conduit

  

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• Patch Empirical

  

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• Patch Empirical

  

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• Bump Empirical pin

  

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• Add control benchmark

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Commits on Jun 16, 2021

• Add changes

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Commits on Jun 23, 2021

• Exclude binary files from whitespace strip

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• Add figure

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• Add Appendix

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• Add Supplementary Material section

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• Add references

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Commits on Jun 24, 2021

• Fix paper

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• More changes

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Commits on Jun 30, 2021

• Implemented some review feedback

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• Add raw timings

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• Minify data

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• Add raw timings table

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• Change

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Commits on Jul 1, 2021

• Forgot to commit

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Commits on Jul 2, 2021

• Blah

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• Blah^2

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Commits on Jul 13, 2021

• Further review changes

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Commits on Jul 14, 2021

• More changes

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• Change what programs respond to

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Commits on Jul 15, 2021

• Small changes

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• Sentence additions

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• Measured -> performed

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• Add comments from @mercere99

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• signalgp-lite -> SignalGP-Lite

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• Strip inline code blocks on SignalGP-Lite

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Commits on Jul 16, 2021

• Environmental has an n apparently

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• Spellcheck

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• uncapitalize GP and alife

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• Small changes

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• Further changes

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• Add references

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• More changes

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• Fix citation

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Commits on Jul 31, 2021

• Alex's feedback

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Commits on Aug 1, 2021

• Add Alex as an author

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• Comment out todo

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• Update paper.md

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• Fix Alex's affiliation

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Commits on Aug 2, 2021

• Add SignalGP citation to summary

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• Add oee4 paper

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• Add more DISHTINY citations

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• Add artificial life blurb

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• Add new citations

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• Add a conclusion section

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Commits on Aug 3, 2021

• 2021-08-03 joss edits and comments

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• Add GP intro citation

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• Incorporate in-text comments from @amlalejini

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• Clarify rng -> random number generator

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• Add details about google benchmark methodology

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• Fix copy/paste sentence

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Commits on Aug 4, 2021

• Merge pull request #9 from amlalejini/joss

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• Explain contextual signal solutions w/o regulation

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• Fix graphs

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• Capitalize graphs

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• Capitalize figures

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Commits on Aug 5, 2021

• Change figures

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Commits on Aug 23, 2021

• Update figure

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• Update plots

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• Update figure

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Commits on Oct 18, 2021

• Add .pdf figures

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Commits on Oct 19, 2021

• Fix labels in .pdfs

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Commits on Oct 26, 2021

• Add control benchmark to SGP

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• Add pdf output to scripts

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Commits on Nov 4, 2021

• Update benchmarks

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• Add control bench to SGPL

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  f0e0352

• Add control bench to SGP

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  ff059bd

Commits on Nov 9, 2021

• Make sure loop does not get optimized out

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• Move #define above includes

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Commits on Nov 10, 2021

• Add comment explaining guard int

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  cc6ee78

• Fix speedup plot

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  4e1ce15

Commits on Nov 11, 2021

• Update figures

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  cc799ce