thesis.tex.bak

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Document type, global settings, and packages
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\documentclass[12pt]{report}   %12 point font for Times New Roman
\usepackage{graphicx}  %for images and plots
\usepackage[letterpaper, left=1.5in, right=1in, top=1in, bottom=1in]{geometry}
\usepackage{setspace}  %use this package to set linespacing as desired
\usepackage{times}  %set Times New Roman as the font
\usepackage[explicit]{titlesec}  %title control and formatting
\usepackage[titles]{tocloft}  %table of contents control and formatting
\usepackage[backend=bibtex, sorting=none, bibstyle=ieee]{biblatex}  %reference manager
\usepackage[bookmarks=true, hidelinks]{hyperref}
\usepackage[page]{appendix}  %for appendices
\usepackage{rotating}  %for rotated, landscape images
\usepackage{ulem}  %for underlined section titles

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%Add your bibliography file here
\bibliography{references}

% prevent certain fields in references from printing in bibliography
\AtEveryBibitem{\clearfield{issn}}
\AtEveryBibitem{\clearlist{issn}}

\AtEveryBibitem{\clearfield{language}}
\AtEveryBibitem{\clearlist{language}}

\AtEveryBibitem{\clearfield{doi}}
\AtEveryBibitem{\clearlist{doi}}

\AtEveryBibitem{\clearfield{url}}
\AtEveryBibitem{\clearlist{url}}

\AtEveryBibitem{%
  \ifentrytype{online}
    {}
    {\clearfield{urlyear}\clearfield{urlmonth}\clearfield{urlday}}}

%%%%%%%%%%%%%%%%%%%%%%
% Start of Document
%%%%%%%%%%%%%%%%%%%%%%

\begin{document}
\doublespacing  %set line spacing

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Title Page
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{titlePage.tex}
\currentpdfbookmark{Title Page}{titlePage}  %add PDF bookmark for this page

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Approval Page
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{approvalPage.tex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Epigraph
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{epigraph.tex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Dedication
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{dedication.tex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Acknowledgments
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\pagenumbering{roman}
\addcontentsline{toc}{chapter}{Acknowledgments}
\setcounter{page}{5} % set the page number appropriately based on the number of intro pages
\input{acknowledgements.tex}

%\addtocontents{toc}{\cftpagenumbersoff{chapter}} 

%\currentpdfbookmark{Acknowledgments}{acknowledgments}
%\addtocontents{toc}{\cftpagenumberson{chapter}} 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Table of Contents
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Format for Table of Contents
\renewcommand{\cftchapdotsep}{\cftdotsep}  %add dot separators
\renewcommand{\cftchapfont}{\bfseries}  %set title font weight
\renewcommand{\cftchappagefont}{}  %set page number font weight
\renewcommand{\cftchappresnum}{Chapter }
\renewcommand{\cftchapaftersnum}{:}
\renewcommand{\cftchapnumwidth}{5em}
\renewcommand{\cftchapafterpnum}{\vskip\baselineskip} %set correct spacing for entries in single space environment
\renewcommand{\cftsecafterpnum}{\vskip\baselineskip}  %set correct spacing for entries in single space environment
\renewcommand{\cftsubsecafterpnum}{\vskip\baselineskip} %set correct spacing for entries in single space environment
\renewcommand{\cftsubsubsecafterpnum}{\vskip\baselineskip} %set correct spacing for entries in single space environment

%format title font size and position (this also applys to list of figures and list of tables)
\titleformat{\chapter}[display]
{\normalfont\bfseries\filcenter}{\chaptertitlename\ \thechapter}{0pt}{\MakeUppercase{#1}}

\renewcommand\contentsname{Table of Contents}

\begin{singlespace}
\tableofcontents
\end{singlespace}

\currentpdfbookmark{Table of Contents}{TOC}

\clearpage

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% List of figures and tables
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\addcontentsline{toc}{chapter}{List of Tables}
\begin{singlespace}
	\setlength\cftbeforetabskip{\baselineskip}  %manually set spacing between entries
	\listoftables
\end{singlespace}

\clearpage

\addcontentsline{toc}{chapter}{List of Figures}
\begin{singlespace}
\setlength\cftbeforefigskip{\baselineskip}  %manually set spacing between entries
\listoffigures
\end{singlespace}

\clearpage

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% This is the Summary (abstract should be separate document)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{summary.tex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% Chapters
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%%%%%%%%%%%%%%%%%%%%%
% formatting
%%%%%%%%%%%%%%%%%%%%%%

% resume page numbering for rest of document
\clearpage
\pagenumbering{arabic}
\setcounter{page}{1} % set the page number appropriately

% Adjust chapter title formatting
\titleformat{\chapter}[display]
{\normalfont\bfseries\filcenter}{\MakeUppercase\chaptertitlename\ \thechapter}{0pt}{\MakeUppercase{#1}}  %spacing between titles
\titlespacing*{\chapter}
  {0pt}{0pt}{30pt}	%controls vertical margins on title
  
% Adjust section title formatting
\titleformat{\section}{\normalfont\bfseries}{\thesection}{1em}{#1}

% Adjust subsection title formatting
\titleformat{\subsection}{\normalfont}{\uline{\thesubsection}}{0em}{\uline{\hspace{1em}#1}}

% Adjust subsubsection title formatting
\titleformat{\subsubsection}{\normalfont\itshape}{\thesubsection}{1em}{#1}

%%%%%%%%%%%%%%%%
% Chapter 1
%%%%%%%%%%%%%%%%

\input{chapter1.tex}

%%%%%%%%%%%%%%%%
% Chapter 2
%%%%%%%%%%%%%%%%

\input{chapter2.tex}

%%%%%%%%%%%%%%%%
% Chapter 3
%%%%%%%%%%%%%%%%

\input{chapter3.tex}

%%%%%%%%%%%%%%%%
% Chapter 4
%%%%%%%%%%%%%%%%

\input{chapter4.tex}

%%%%%%%%%%%%%%%%
% Chapter 5
%%%%%%%%%%%%%%%%

\input{chapter5.tex}

%%%%%%%%%%%%%%%%
% Appendices
%%%%%%%%%%%%%%%%

\input{appendix.tex}

%%%%%%%%%%%%%%%%
% References
%%%%%%%%%%%%%%%%

\begin{singlespace}  % use single-line spacing for multi-line text within a single reference
	\setlength\bibitemsep{\baselineskip}  %manually set separataion betwen items in bibliography to double space
	\printbibliography[title={References}]
\end{singlespace}

\addcontentsline{toc}{chapter}{References}  %add References section to Table of Contents

%%%%%%%%%%%%%%%%
% Vita 
% Only for PhD students
% Masters students remove this line
%%%%%%%%%%%%%%%%
\input{vita.tex}


\end{document}