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<!DOCTYPE html>
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<title>Satori Portal — MIT Satori User Documentation documentation</title>
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<li class="toctree-l1"><a class="reference internal" href="satori-basics.html">Satori Basics</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-basics.html#what-is-satori">What is Satori?</a></li>
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<li class="toctree-l2"><a class="reference internal" href="satori-getting-started.html#shared-hpc-clusters">Shared HPC Clusters</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-getting-started.html#logging-in-to-satori">Logging in to Satori</a></li>
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<li class="toctree-l3"><a class="reference internal" href="satori-getting-started.html#using-scp-or-rysnc">Using scp or rysnc</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-workload-manager-using-slurm.html">Running your AI training jobs on Satori using Slurm</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-workload-manager-using-slurm.html#a-note-on-exclusivity">A Note on Exclusivity</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-workload-manager-using-slurm.html#interactive-jobs">Interactive Jobs</a></li>
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<li class="toctree-l3"><a class="reference internal" href="satori-workload-manager-using-slurm.html#running-jobs-in-series">Running jobs in series</a></li>
<li class="toctree-l3"><a class="reference internal" href="satori-workload-manager-using-slurm.html#note-on-pytorch-1-4">Note on Pytorch 1.4</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-troubleshooting.html">Troubleshooting</a></li>
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<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#install-anaconda">[1] Install Anaconda</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#wml-ce-and-open-ce-setting-up-the-software-repository">[2] WML-CE and Open-CE: Setting up the software repository</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#wml-ce-and-open-ce-creating-and-activate-conda-environments-recommended">[3] WML-CE and Open-CE: Creating and activate conda environments (recommended)</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#wml-ce-installing-all-frameworks-at-the-same-time">[4] WML-CE: Installing all frameworks at the same time</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#wml-ce-testing-ml-dl-frameworks-pytorch-tensorflow-etc-installation">[5] WML-CE: Testing ML/DL frameworks (Pytorch, TensorFlow etc) installation</a><ul>
<li class="toctree-l3"><a class="reference internal" href="satori-ai-frameworks.html#controlling-wml-ce-release-packages">Controlling WML-CE release packages</a></li>
<li class="toctree-l3"><a class="reference internal" href="satori-ai-frameworks.html#additional-conda-channels">Additional conda channels</a></li>
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<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#the-wml-ce-supplementary-channel-is-available-at-https-anaconda-org-powerai">The WML CE Supplementary channel is available at: https://anaconda.org/powerai/.</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-ai-frameworks.html#the-wml-ce-early-access-channel-is-available-at-https-public-dhe-ibm-com-ibmdl-export-pub-software-server-ibm-ai-conda-early-access">The WML-CE Early Access channel is available at: https://public.dhe.ibm.com/ibmdl/export/pub/software/server/ibm-ai/conda-early-access/.</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-distributed-deeplearning.html">Distributed Deep Learning</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-julia.html">Julia on Satori</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#getting-started">Getting started</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#getting-help">Getting help?</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#a-simple-batch-script-example">A simple batch script example</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#recipe-for-running-single-gpu-single-threaded-interactive-session-with-cuda-aware-mpi">Recipe for running single GPU, single threaded interactive session with CUDA aware MPI</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#running-a-multi-process-julia-program-somewhat-interactively">Running a multi-process julia program somewhat interactively</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-julia.html#an-example-of-installing-https-github-com-clima-climatemachine-jl-on-satori">An example of installing https://github.com/clima/climatemachine.jl on Satori</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-R.html">R on Satori</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-R.html#getting-started-with-r">Getting Started with R</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-R.html#installing-packages">Installing Packages</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-R.html#a-simple-batch-script-example">A Simple Batch Script Example</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-R.html#r-and-python">R and Python</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-R.html#running-r-in-a-container">Running R in a container</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="satori-cuda-aware-mpi.html">Using MPI and CUDA on Satori</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-cuda-aware-mpi.html#getting-started">Getting started</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-cuda-aware-mpi.html#compiling">Compiling</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-cuda-aware-mpi.html#submiting-a-batch-script">Submiting a batch script</a><ul>
<li class="toctree-l3"><a class="reference internal" href="satori-cuda-aware-mpi.html#batch-script-header">Batch script header</a></li>
<li class="toctree-l3"><a class="reference internal" href="satori-cuda-aware-mpi.html#assigning-gpus-to-mpi-ranks">Assigning GPUs to MPI ranks</a></li>
<li class="toctree-l3"><a class="reference internal" href="satori-cuda-aware-mpi.html#running-the-mpi-program-within-the-batch-script">Running the MPI program within the batch script</a></li>
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<li class="toctree-l2"><a class="reference internal" href="satori-cuda-aware-mpi.html#a-complete-example-slurm-batch-script">A complete example SLURM batch script</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-cuda-aware-mpi.html#using-alternate-mpi-builds">Using alternate MPI builds</a></li>
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<li class="toctree-l1"><a class="reference internal" href="lsf-templates/satori-lsf-ml-examples.html">Example machine learning LSF jobs</a><ul>
<li class="toctree-l2"><a class="reference internal" href="lsf-templates/satori-lsf-ml-examples.html#a-single-node-4-gpu-keras-example">A single node, 4 GPU Keras example</a></li>
<li class="toctree-l2"><a class="reference internal" href="lsf-templates/satori-lsf-ml-examples.html#a-single-node-4-gpu-caffe-example">A single node, 4 GPU Caffe example</a></li>
<li class="toctree-l2"><a class="reference internal" href="lsf-templates/satori-lsf-ml-examples.html#a-multi-node-pytorch-example">A multi-node, pytorch example</a></li>
<li class="toctree-l2"><a class="reference internal" href="lsf-templates/satori-lsf-ml-examples.html#a-multi-node-pytorch-example-with-the-horovod-conda-environment">A multi-node, pytorch example with the horovod conda environment</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-howto-videos.html">Satori Howto Video Sessions</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-howto-videos.html#installing-wmcle-on-satori">Installing WMCLE on Satori</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-howto-videos.html#pytorch-with-ddl-on-satori">Pytorch with DDL on Satori</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-howto-videos.html#tensorflow-with-ddl-on-satori">Tensorflow with DDL on Satori</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-howto-videos.html#jupyterlab-with-ssh-tunnel-on-satori">Jupyterlab with SSH Tunnel on Satori</a></li>
</ul>
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<li class="toctree-l1"><a class="reference internal" href="satori-public-datasets.html">Satori Public Datasets</a></li>
<li class="toctree-l1"><a class="reference internal" href="singularity.html">Singularity for Satorians</a><ul>
<li class="toctree-l2"><a class="reference internal" href="singularity.html#fast-start">Fast start</a></li>
<li class="toctree-l2"><a class="reference internal" href="singularity.html#other-notes">Other notes</a></li>
<li class="toctree-l2"><a class="reference internal" href="singularity.html#interactive-allocation">Interactive Allocation:</a></li>
<li class="toctree-l2"><a class="reference internal" href="singularity.html#non-interactive-batch-mode">Non interactive / batch mode</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="satori-relion-cryoem.html">Relion Cryoem for Satorians</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-relion-cryoem.html#prerequisites">Prerequisites</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-relion-cryoem.html#quick-start">Quick start</a></li>
<li class="toctree-l2"><a class="reference internal" href="satori-relion-cryoem.html#other-notes">Other notes</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="satori-copy-large-filesets.html">Copying larger files and large file sets</a></li>
<li class="toctree-l1"><a class="reference internal" href="satori-copy-large-filesets.html#using-mrsync">Using mrsync</a></li>
<li class="toctree-l1"><a class="reference internal" href="satori-copy-large-filesets.html#using-aspera-for-remote-file-transfer-to-satori-cluster">Using Aspera for remote file transfer to Satori cluster</a></li>
<li class="toctree-l1"><a class="reference internal" href="satori-doc-examples-contributing.html">FAQ</a><ul>
<li class="toctree-l2"><a class="reference internal" href="satori-doc-examples-contributing.html#tips-tricks-and-questions">Tips, tricks and questions</a><ul>
<li class="toctree-l3"><a class="reference internal" href="tips-and-tricks/storage/index.html">How can I see disk usage?</a></li>
<li class="toctree-l3"><a class="reference internal" href="tips-and-tricks/storage/index.html#where-should-i-put-world-or-project-shared-datasets">Where should I put world or project shared datasets?</a></li>
<li class="toctree-l3"><a class="reference internal" href="portal-howto/customization.html">How can I create custom Jupyter kernels for the Satori web portal?</a><ul>
<li class="toctree-l4"><a class="reference internal" href="portal-howto/customization.html#steps-to-create-a-kernel">Steps to create a kernel</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="tips-and-tricks/carlos-quick-start-commands/index.html">How do I set up a basic conda environment?</a></li>
<li class="toctree-l3"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html">System software queries</a><ul>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-linux-distribution-version-am-i-running">What Linux distribution version am I running?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-linux-kernel-level-am-i-running">What Linux kernel level am I running?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-software-levels-are-installed-on-the-system">What software levels are installed on the system?</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#system-hardware-queries">System hardware queries</a><ul>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-is-my-cpu-configuration">What is my CPU configuration?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#how-much-ram-is-there-on-my-nodes">How much RAM is there on my nodes?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-smt-mode-are-my-nodes-in">What SMT mode are my nodes in?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-cpu-governor-is-in-effect-on-my-nodes">What CPU governor is in effect on my nodes?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-are-the-logical-ids-and-uuids-for-the-gpus-on-my-nodes">What are the logical IDs and UUIDs for the GPUs on my nodes?</a></li>
<li class="toctree-l4"><a class="reference internal" href="tips-and-tricks/sys_queries/index.html#what-is-the-ibm-model-of-my-system">What is the IBM model of my system?</a></li>
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<li class="toctree-l1"><a class="reference internal" href="satori-tutorial-examples.html">Green Up Hackathon IAP 2020</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="tutorial-examples/pytorch-style-transfer/index.html">Pytorch Style Transfer</a><ul>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/eric-fiala-wmlce-notebooks-master/index.html#useful-references">Useful references</a></li>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/unsupervised-learning-on-ocean-ecosystem-model/index.html#description">Description</a></li>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/unsupervised-learning-on-ocean-ecosystem-model/index.html#code-and-input-data-repositories-for-this-example">Code and input data repositories for this example</a></li>
<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/unsupervised-learning-on-ocean-ecosystem-model/index.html#useful-references">Useful references</a></li>
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<li class="toctree-l3"><a class="reference internal" href="tutorial-examples/biggan-pytorch/index.html">BigGAN-PyTorch</a><ul>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/biggan-pytorch/index.html#commands-to-run-this-example">Commands to run this example</a></li>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/biggan-pytorch/index.html#useful-references">Useful references</a></li>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/energy-profiling/index.html#useful-references">Useful references</a></li>
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<li class="toctree-l3"><a class="reference internal" href="tutorial-examples/nvprof-profiling/index.html">Profiling code with nvprof</a><ul>
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<li class="toctree-l4"><a class="reference internal" href="tutorial-examples/nvprof-profiling/index.html#useful-references">Useful references</a></li>
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