new version and dependency removal also geneformer no scperturb fix #464
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CodeQL Action major versions v1 and v2 have been deprecated. Please update all occurrences of the CodeQL Action in your workflow files to v3. For more information, see https://github.blog/changelog/2025-01-10-code-scanning-codeql-action-v2-is-now-deprecated/
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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