DO NOT MERGE: add notebook demonstrating proteomic aggregation and example analysis

README.md

@@ -7,7 +7,7 @@ Notebooks that are ready for use and exploration.
 - [Bio-Scales Biogeochemical MetaData](https://github.com/microbiomedata/nmdc_notebooks/tree/main/bioscales_biogeochemical_metadata)
 - [NEON Soil Microbial Community Composition](https://github.com/microbiomedata/nmdc_notebooks/tree/main/taxonomic_dist_by_soil_layer)
 - [Natural Organic Matter Composition by Sample Type](https://github.com/microbiomedata/nmdc_notebooks/tree/main/NOM_visualizations)
-
+- [Proteomic Data Aggregation and Visualization]()
 
 ## Overview 
 

proteomic_aggregation_and_visualization/README.md

@@ -0,0 +1,11 @@
+# Proteomic Data Aggregation and Visualization
+
+This folder includes two notebooks (in R and Python) that the aggregation of proteomic data via National Microbiome Data Collaborative's [Runtime API](https://api.microbiomedata.org/docs). They also provide an example proteomic analysis and a method of connecting the results to other datasets in NMDC. 
+
+## R
+- [Static rendered Jupyter notebook](). This is the recommended way to interact with the notebook. _Viewing only, not editable_
+- [![Open In Colab](). **Running this notebook in the colab interactive environment is not recommended due to long API calls** _You need a google account to use this option_
+
+## Python
+- [Static rendered Jupyter notebook](ttps://app.reviewnb.com/microbiomedata/nmdc_notebooks/blob/95-create-notebook-that-aggregates-proteomic-workflow-outputs-and-visualizes-the-results/proteomic_aggregation_and_visualization/python/proteomic_aggregation_and_visualization.ipynb/). This is the recommended way to interact with the notebook. _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/95-create-notebook-that-aggregates-proteomic-workflow-outputs-and-visualizes-the-results/proteomic_aggregation_and_visualization/python/proteomic_aggregation_and_visualization.ipynb). **Running this notebook in the colab interactive environment is not recommended due to long API calls** _You need a google account to use this option_