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v0.9.0

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@cdiener cdiener released this 05 Jun 16:06
· 605 commits to main since this release

Version 0.9 is probably one of the largest releases to micom yet and brings a lot of changes and features. I invite you to check out the new documentation at https://resendislab.github.io/micom.

Major changes

  • completely new method cooperative trade-off to get a unique set of growth rates for the taxa in the community
  • allowed larger and custom bounds for exchanges between environment and microbes
  • taxa knockouts to analyze co-dependencies
  • elasticity coefficients to evaluate the effect of single target interventions
  • improved numerical stability