v0.9.0
Version 0.9 is probably one of the largest releases to micom yet and brings a lot of changes and features. I invite you to check out the new documentation at https://resendislab.github.io/micom.
Major changes
- completely new method
cooperative trade-off
to get a unique set of growth rates for the taxa in the community - allowed larger and custom bounds for exchanges between environment and microbes
- taxa knockouts to analyze co-dependencies
- elasticity coefficients to evaluate the effect of single target interventions
- improved numerical stability