new doc builder, lower pandas req

.github/workflows/docs.yml

@@ -0,0 +1,29 @@
+name: Python package
+
+on:
+  push:
+    branches: [ master ]
+    tags:
+    - 'v[0-9]+.[0-9]+.[0-9]+'
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Set up Python
+      uses: actions/setup-python@v2
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip cryptography
+        pip install wheel numpy Cython
+        pip install biom-format
+        pip install sphinx nbsphinx jupyter-sphinx-theme
+        pip install -e .
+    - name: Build docs
+      run: |
+        cd docs && make html
+    - name: Deploy
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./docs

docs/source/conf.py

@@ -52,7 +52,7 @@
 
 # General information about the project.
 project = 'micom'
-copyright = '2017-2020, Christian Diener'
+copyright = '2017-2021, Christian Diener'
 author = 'Christian Diener'
 
 # The version info for the project you're documenting, acts as replacement for
@@ -61,8 +61,6 @@
 #
 # The full version, including alpha/beta/rc tags.
 release = micom.__version__
-# The short X.Y version.
-version = ".".join(release.split(".")[:2]) + ".x"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

setup.py

@@ -72,7 +72,7 @@
         "cobra>=0.17.1",
         "depinfo>=1.7.0",
         "optlang>=1.4.7",
-        "pandas>=1.2.0",
+        "pandas>=1.0.0",
         "rich>=9.10.0",
         "jinja2>=2.10.0",
         "scikit-learn>=0.22.0",