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PredictiveValueFPs

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A repository for a project to examine the predictive value of frequent patterns.

Study Status: Results Available

  • Analytics use case(s): Population-Level Estimation
  • Study type: Clinical Application
  • Tags: -
  • Study lead: S.Ioannou
  • Study start date: 10 July 2022
  • Study end date: -
  • Protocol: add protocol
  • Publications: -
  • Results explorer: -

Requirements

  • A database in Common Data Model version 5 in one of these platforms: SQL Server, Oracle, PostgreSQL, IBM Netezza, Apache Impala, Amazon RedShift, Google BigQuery, or Microsoft APS.
  • R version 4.0.5
  • On Windows: RTools
  • Java
  • 100 GB of free disk space

How to run

  1. Follow these instructions for setting up your R environment, including RTools and Java.

  2. Open your study package in RStudio. Use the following code to install all the dependencies:

    install.packages("renv")
    renv::activate()
    renv::restore()
  3. In RStudio, select 'Build' then 'Install and Restart' to install the PredictiveValueFPs package.

  4. Before running the analysis, fill in the missing parts of the code provided under extras/CodeToRun_parallel.R and extras/ScriptToRunParallel.R. Then run the contents of the extras/CodeToRun_parallel.R to run the analysis.

License

The PredictiveValueFPs package is licensed under Apache License 2.0

Development

PredictiveValueFPs was developed in ATLAS and R Studio.

Development status

Manuscript preparation.