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🔬 Pairwise Sequence Aligment Tool (PSAT) 🔬

This repository offers a simple application to align sequences of proteins or amino acids. On PSAT you will find some options of sequence alignment such as global alignment, implemented using the Needleman-Wunsh algorithm, and local alignment, using the Smith-Waterman algorithm.

PSAT UI

$ git clone https://github.com/mgfzemor/Pairwise-sequence-Aligment-Tool.git

💾 Prerequisites

To have this running your local machine, you only must have a Python version = 3.* and a Virtualenv tool.

Learn more about Virtualenv, which is pretty useful to manage isolated Python environments.

  • Installing Virtualenv
$ sudo apt-get install virtualenv

⚡ Getting Started

  • Install application requirements listed above
  • clone project
$ git clone https://github.com/mgfzemor/Pairwise-sequence-Aligment-Tool.git
  • Go to project path and create a virtual environment
$ cd Pairwise-sequence-Aligment-Tool/ && virtualenv env
  • Active the virtualenv and install requirements
$ . env/bin/activate && pip install -r requirements.txt
  • Run application
$ flask run