edit output path

mesoscope · Jul 26, 2024 · 0f0bfd5 · 0f0bfd5
1 parent 801660e
commit 0f0bfd5
Showing 1 changed file with 9 additions and 8 deletions.
diff --git a/cellpack/autopack/Analysis.py b/cellpack/autopack/Analysis.py
@@ -460,6 +460,10 @@ def create_report(
         run_*_analysis: bool
             whether to run specific analysis
         """
+        if report_output_path is None:
+            report_output_path = self.output_path
+        report_output_path = Path(report_output_path)
+
         self.ingredient_key_dict = self.read_dict_from_glob_file("ingredient_keys_*")
 
         if ingredient_keys is None:
@@ -491,7 +495,7 @@ def create_report(
 
         md_object = MarkdownWriter(
             title="Packing analysis report",
-            output_path=self.output_path,
+            output_path=report_output_path,
             output_image_location=output_image_location,
             report_name="analysis_report",
         )
@@ -751,10 +755,7 @@ def add_ingredient_positions_to_plot(
                 )
                 # plot the sphere
                 if ingr.use_rbsphere:
-                    (
-                        ext_recipe,
-                        pts,
-                    ) = ingr.getInterpolatedSphere(
+                    (ext_recipe, pts,) = ingr.getInterpolatedSphere(
                         seed_ingredient_positions[-i - 1],
                         seed_ingredient_positions[-i],
                     )
@@ -856,9 +857,9 @@ def update_pairwise_distances(
                 ingr.name,
                 ingr2.name,
             ):
-                pairwise_distance_dict[seed_index][f"{ingr.name}_{ingr2.name}"] = (
-                    self.env.calc_pairwise_distances(ingr.name, ingr2.name).tolist()
-                )
+                pairwise_distance_dict[seed_index][
+                    f"{ingr.name}_{ingr2.name}"
+                ] = self.env.calc_pairwise_distances(ingr.name, ingr2.name).tolist()
 
         return pairwise_distance_dict