From 8cb21186756326a9337c15a3387883a907e11313 Mon Sep 17 00:00:00 2001 From: meono Date: Fri, 9 Sep 2016 16:47:22 +0200 Subject: [PATCH] fix: sleep time might be an issue on job stability --- iLoop_RNAseq_pipeline/master_qsub.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/iLoop_RNAseq_pipeline/master_qsub.py b/iLoop_RNAseq_pipeline/master_qsub.py index 2954a8b..d60cdca 100644 --- a/iLoop_RNAseq_pipeline/master_qsub.py +++ b/iLoop_RNAseq_pipeline/master_qsub.py @@ -386,7 +386,7 @@ def job_submitter(js, path, name): p = subprocess.Popen(['qsub', jfn], stdout=subprocess.PIPE, stderr=subprocess.PIPE) p.wait() out, err = p.communicate() - os.system('sleep 0.5') + os.system('sleep 1') return out.strip().decode(sys.getdefaultencoding()) def job_organizer(project_path, groups, ref, defaults, map_to_mask, ppn='8', readtype='raw', jobs=None):