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fix: sleep time might be an issue on job stability
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meono committed Sep 9, 2016
1 parent 12168ed commit 8cb2118
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion iLoop_RNAseq_pipeline/master_qsub.py
Original file line number Diff line number Diff line change
Expand Up @@ -386,7 +386,7 @@ def job_submitter(js, path, name):
p = subprocess.Popen(['qsub', jfn], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
p.wait()
out, err = p.communicate()
os.system('sleep 0.5')
os.system('sleep 1')
return out.strip().decode(sys.getdefaultencoding())

def job_organizer(project_path, groups, ref, defaults, map_to_mask, ppn='8', readtype='raw', jobs=None):
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