AB Alignment Lengths

--alignment_lengths, -al

Description

Count the number of columns in one or more alignments

Example

Input file: Panx.phy

 4 481
Ate-PanxβG 
MVAVATDLKELLVIKGKSRIDTFSDQYNRIFIVRLLMVCTIIMGFSWYTDSISCIVPETHNLD---GDFVSAACWIQGVYVFKELTSRVDK---VAYFGMPKNIDFEGIEIGT------DNLCNLKPKLNEKKSENCIPMTKIFYLQYQYMPFFVAALAILYYLPYIAFRTLNKDKQSLKDEMKKD---DKTAKSIVENHFRNFEEARTTETR-NMTIRIILNIVIKVLYILSNVVALLALNNVLNDEFLSYGQKFVAWTRNNNTIQYDY--MGMRDLPKPGNALLPPFGYCEMYESARDVKTTLANAHKFV--CEISQNILYQYCLAVLWFAIVAGIVISVFGLLHCLIIYF---------IDFAGFRF--PKEEADFSRLHVREVELMHYVKEKDVKTFYECIQMLPKRDGDRE---KHNTLDG-------------------------------------------------------
Ate-PanxβD 
MASQINSIKSLLTIKPKSRNDDYTDQFHRIFMVKMSMVASLLLGLNWVKDTITCIIPGTAGIS---GDYVHQACWIQGFYIYRDLQHTPGK---FGLFGIPDDIENNGLHATS------GTPCHVNKH-----SVDCVPLTKTFYLQYQWFPFYMATLGFLYYLPYLLFRCVNADLISLKGNLKT----DVDIDVVVKNYF----NHVINPIG-KMRLRLIANIFVKLFYIIVNVIAFTGTDRLINGDFKNYGRDWMAWTKHDNKEEFDY--TETRKTWRPAEKLLPTFGLCEVLELGKDIKHSLFNSHRFV--CEISQNVLYQYVLALLWFLFIIGMVVSVLGLLMLIGEHVAIH------AVAVTSYDDADQTKKVYAALSLRECQYLECIRKKDIIVFTNVIRKLKDERLHLD---GNVYLS----NNIS-SISKN------QNPYQDSQM-------MLQETLNIS-----------
Hvu-PanxβI 
MIGLESDLRRILTVTLKARHDDLTDQLNRLIMVKLFLVCCLIMGISWFTDSINCIVPAINTVE---TAFVSQACWIQGFYVFKPLMTRFD----VAFFGIPRDIDSNGLLAS-------GELCTVQPSFGIA-SDKCIPMEKIFYLQYQWMPFLIGSLSAVYYIPYVFFLQANSDMISLKAAVMGK----EKPSKIVSMFF----GCKSQR---FLKLRVVSSIFVKSLYLIVNIGTFVFLNFLLNGEYYKYGVRWANWSKQSNTDAFDY--MGKKTNPRPGSQLLPPFGYCELFESSKDIKYTVANRHKFV--CELSQHVLYQYCLLVLWFFIIGGIIISSLGIFFHVYQYV---------HLICARYSYKGHKNMFLKTLTLRELLYLDLIKTKNNKLYEEVIENLELQSSI-----------------------------------------------LFEDNKCKKKRIGRKSLLRM
Che-PanxβF 
M-VVVRSLKDILALKIKARHDSPCDQFSRLFMTKMFLIAAVIMGFDYFSDRISCIHPKKTDLT---KEFIHAACWISGFYVYKEMRDRPRE---SGYYGIPYKIDHDGIDTQT------QQLCLTNNVKVF--RPECQSMTRIYYLQYQWMPFYIGALGVLYYLPYILFRIINVDLISLKSVLKSV---TSDADHIVRNYF----NYKINSIS-KLRMRVVLNLFVKCLYIVVNLFGFYFTDYLLHGNYRSYGTEYVRWARSDSARSHLP--IKFRKGPKPGNHLLPTMGYCEVEEASKDQLTVHHNSYVFL--CEISTNILYQYVLVVLWFLFIISICISIIGLLSALFGHL---------FKLTCYSR-SSPKKTIYRVITLREAEYLNFIKTKNMVMYGEVLRKLKQQRSDLQ---------------------GKIIDGFETS---------NGFV---------------------
 2 683
Mle-Panxα9 
----mldilskf------------kgvtpfkgitiddgwdqlnrsfmfvllvvmgttvtvr-qytgsvisc--------dgfkkfg--stfaedycwtqglytvlegydqp-sqnip---------ypgl---lpdeappct--------p-vrlkdgtrlkcpdpdqllsptrishlwyqwvpfyfwlaaaaffmpyllyknf-gmgdikplvrllhn--pves--dqelkkmtdkaatwlfykfd-lymseqsllasltrkhglglsmvfvkilyaavsfgcflltaemfsigd--fktygsew----ikklkl-ednlateekdklfpkmvacevkrwgasgieeeqgmcvlapnvinqylflilwfclvfvmfcnivsifaslikllftygsyrrllsta-flrddsa---ikhmyfnvgssgrlilhvlanntaprvfedilltlapkliqrkl-rgngkal------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Mle-Panxα6 
-m--lleilanf------------kgatpfkeivlddkwdqinrcymfllcvifgtvvtfr-qytggiiac--------dgltkfs--aafaedycwtqglytikeaydiv-dnslp---------ypgl---lpedappcl--------s-rrlvsggriecppadlyleptrvhhtwyqwipfyfwvisiafigpyivykql-gvnelkpilamlhn--pvdg--ddvtkdqiskvsrwlaikln-ifiqekstyakitqshrmfilifltkifylgvslatmyftdtmfesgr--yltygsew----fasldk-qsnytsfvrdrlfpkmvaceikrwgpsgmeeeqgmcvlapnvmnqylflifwfalvftifsntfsiffsvsthcfidggyqrfiqsc-flkensk---lkfiyfncgttgrtylhliaknvnprifeqliiklsadlveekn-kqhlkgskd------------------------------------------------------------------------------------------------------ilv-------------------------------------------------------------------------------------------------------------

Usage example

$: alb Panx.phy -al

Output

# Alignment 1
481
# Alignment 2
683