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Destroyed List of PIAModeller command line parameters (markdown)
Updated Home (markdown)
Destroyed Web interface: Wizard (markdown)
Destroyed Web interface: Advanced Mode (markdown)
Updated Running PIA via KNIME (markdown)
Destroyed Overview of PIA KNIME nodes (markdown)
Created JSON analysis file (markdown)
new CLI version
Destroyed ProteomeDiscoverer MSF support (markdown)
Destroyed Running PIA via the web interface (markdown)
Destroyed parameters XML file (markdown)
Destroyed pia.properties (markdown)
Destroyed Dependencies (markdown)
protein level
peptide level
geenral and PSM level
Updated File Formats supported and Search engines scores models (markdown)
Created File Formats supported and Search engines scores models (markdown)
Updated parameters XML file (markdown)
PIA tutorial and the data for it
Added further info on new nodes
Added new information