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update documentation
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@mdpetters
mdpetters committed Nov 13, 2020
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97 changes: 55 additions & 42 deletions docs/documentation/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,11 +6,17 @@ git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
version = "0.5.0"

[[Adapt]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "42c42f2221906892ceb765dbcb1a51deeffd86d7"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "2.3.0"

[[ArrayInterface]]
deps = ["LinearAlgebra", "Requires", "SparseArrays"]
git-tree-sha1 = "920136b6b8ae5bd28a3c45d68e55421dec156d7f"
git-tree-sha1 = "bd09109dffaa3926a20178cb8432edd729be0db0"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "2.13.6"
version = "2.13.7"

[[Artifacts]]
deps = ["Pkg"]
Expand Down Expand Up @@ -77,9 +83,9 @@ version = "0.3.0"

[[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "48608f94f3e1a755f65e7ef34684675bb3653030"
git-tree-sha1 = "a706ff10f1cd8dab94f59fd09c0e657db8e77ff0"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.21.0"
version = "3.23.0"

[[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -106,9 +112,9 @@ uuid = "7ad07ef1-bdf2-5661-9d2b-286fd4296dac"
version = "0.2.0"

[[DataAPI]]
git-tree-sha1 = "176e23402d80e7743fc26c19c681bfb11246af32"
git-tree-sha1 = "ad84f52c0b8f05aa20839484dbaf01690b41ff84"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.3.0"
version = "1.4.0"

[[DataFrames]]
deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
Expand All @@ -118,9 +124,9 @@ version = "0.21.8"

[[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "db07bb22795762895b60e44d62b34b16c982a687"
git-tree-sha1 = "fb0aa371da91c1ff9dc7fbed6122d3e411420b9c"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.7"
version = "0.18.8"

[[DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
Expand Down Expand Up @@ -149,9 +155,9 @@ version = "1.0.1"

[[Distances]]
deps = ["LinearAlgebra", "Statistics"]
git-tree-sha1 = "a5b88815e6984e9f3256b6ca0dc63109b16a506f"
git-tree-sha1 = "e8b13ba5f166e11df2de6fc283e5db7864245df0"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
version = "0.9.2"
version = "0.10.0"

[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
Expand All @@ -170,10 +176,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.8.3"

[[Documenter]]
deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "fb1ff838470573adc15c71ba79f8d31328f035da"
deps = ["Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "71e35e069daa9969b8af06cef595a1add76e0a11"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.25.2"
version = "0.25.3"

[[Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -201,9 +207,9 @@ version = "0.9.7"

[[FiniteDiff]]
deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
git-tree-sha1 = "a78ee56e4636c20c2db9ccde8afe57065f6ab387"
git-tree-sha1 = "04e18906acf9c7f5b934a7ec3adc82280fb1953b"
uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
version = "2.7.0"
version = "2.7.1"

[[FixedPointNumbers]]
deps = ["Statistics"]
Expand Down Expand Up @@ -298,6 +304,12 @@ git-tree-sha1 = "0ec2e6e6a049eb8520c19cd8976085afcf2943fb"
uuid = "a51ab1cf-af8e-5615-a023-bc2c838bba6b"
version = "67.1.0+2"

[[IOCapture]]
deps = ["Logging"]
git-tree-sha1 = "377252859f740c217b936cebcd918a44f9b53b59"
uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
version = "0.1.1"

[[IndirectArrays]]
git-tree-sha1 = "c2a145a145dc03a7620af1444e0264ef907bd44f"
uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959"
Expand All @@ -315,9 +327,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[Interpolations]]
deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
git-tree-sha1 = "2b7d4e9be8b74f03115e64cf36ed2f48ae83d946"
git-tree-sha1 = "d2ff0813f0f110918db2537201686575fcf8d345"
uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
version = "0.12.10"
version = "0.13.0"

[[InvertedIndices]]
deps = ["Test"]
Expand All @@ -336,9 +348,9 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[JLLWrappers]]
git-tree-sha1 = "7cec881362e5b4e367ff0279dd99a06526d51a55"
git-tree-sha1 = "c70593677bbf2c3ccab4f7500d0f4dacfff7b75c"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.1.2"
version = "1.1.3"

[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
Expand All @@ -354,9 +366,9 @@ version = "0.8.4"

[[KernelDensity]]
deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
git-tree-sha1 = "2fdea3992af1bd7a90535d2937555d7b69d5e5ee"
git-tree-sha1 = "09aeec87bdc9c1fa70d0b508dfa94a21acd280d9"
uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
version = "0.6.1"
version = "0.6.2"

[[LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -412,10 +424,10 @@ deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[Loess]]
deps = ["Distances", "Random", "Statistics", "Test"]
git-tree-sha1 = "0ee46caf683a422b595be4dfaed6cda28f541e25"
deps = ["Distances", "Statistics"]
git-tree-sha1 = "571701e0ccda39416b98c63813df551ec1745849"
uuid = "4345ca2d-374a-55d4-8d30-97f9976e7612"
version = "0.5.0"
version = "0.5.2"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
Expand Down Expand Up @@ -480,9 +492,10 @@ uuid = "6c575b1c-77cb-5640-a5dc-a54116c90507"
version = "0.3.1"

[[OffsetArrays]]
git-tree-sha1 = "a416e2f267e2c8729f25bcaf1ce19d2893faf393"
deps = ["Adapt"]
git-tree-sha1 = "9db93b990af57b3a56dca38476832f60d58f777b"
uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
version = "1.3.1"
version = "1.4.0"

[[OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -497,9 +510,9 @@ uuid = "87e2bd06-a317-5318-96d9-3ecbac512eee"
version = "2.0.1"

[[OrderedCollections]]
git-tree-sha1 = "16c08bf5dba06609fe45e30860092d6fa41fde7b"
git-tree-sha1 = "cf59cfed2e2c12e8a2ff0a4f1e9b2cd8650da6db"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.3.1"
version = "1.3.2"

[[PCRE_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -521,9 +534,9 @@ version = "1.42.4+10"

[[Parsers]]
deps = ["Dates"]
git-tree-sha1 = "6fa4202675c05ba0f8268a6ddf07606350eda3ce"
git-tree-sha1 = "b417be52e8be24e916e34b3d70ec2da7bdf56a68"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "1.0.11"
version = "1.0.12"

[[Pixman_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -635,9 +648,9 @@ version = "0.10.3"

[[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "016d1e1a00fabc556473b07161da3d39726ded35"
git-tree-sha1 = "da4cf579416c81994afd6322365d00916c79b8ae"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "0.12.4"
version = "0.12.5"

[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
Expand Down Expand Up @@ -673,9 +686,9 @@ version = "1.0.0"

[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "24a584cf65e2cfabdadc21694fb69d2e74c82b44"
git-tree-sha1 = "5131a624173d532299d1c7eb05341c18112b21b8"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.1.0"
version = "1.2.1"

[[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
Expand All @@ -690,9 +703,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[WoodburyMatrices]]
deps = ["LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "28ffe06d28b1ba8fdb2f36ec7bb079fac81bac0d"
git-tree-sha1 = "59e2ad8fd1591ea019a5259bd012d7aee15f995c"
uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
version = "0.5.2"
version = "0.5.3"

[[XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
Expand All @@ -701,10 +714,10 @@ uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.9.10+3"

[[XSLT_jll]]
deps = ["Libdl", "Libgcrypt_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "8bb981a5c4a7efc799250c46ef757cbfd6c5ba9b"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "2b3eac39df218762d2d005702d601cd44c997497"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.33+3"
version = "1.1.33+4"

[[Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
Expand Down Expand Up @@ -761,7 +774,7 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.11+18"

[[libpng_jll]]
deps = ["Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "0a93f3eae5b80f08dc789e549657c199f1da6417"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "6abbc424248097d69c0c87ba50fcb0753f93e0ee"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.37+5"
version = "1.6.37+6"
39 changes: 19 additions & 20 deletions docs/documentation/make.jl
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Original file line number Diff line number Diff line change
@@ -1,4 +1,3 @@
push!(LOAD_PATH, "../src/")
using Documenter, DifferentialMobilityAnalyzers, LinearAlgebra

makedocs(
Expand All @@ -11,24 +10,24 @@ makedocs(
"Tutorial" => "tutorial.md",
"Notebooks" => "notebooks.md"
],
"Manual" => Any[
"Overview" => "man/overview.md",
"Size Distributions" => "man/sizedistribution.md",
"Initializing DMAs" => "man/dmas.md",
"Convolution Matrices" => "man/matrix.md",
"Forward Models" => "man/forward.md",
"Inverse Models" => "man/inverse.md",
"Performance Benchmarks" => "man/benchmarks.md",
],
"Library" => Any[
"Physics" => "lib/physics.md",
"Data Types" => "lib/types.md",
"Operators" => "lib/operators.md",
"Helper Functions" => "lib/helpers.md",
"Inversion Routines" => "lib/inversion.md",
"Benchmarks" => "lib/benchmarks.md"
],
"References" => "references.md"
"Manual" => Any[
"Overview" => "man/overview.md",
"Size Distributions" => "man/sizedistribution.md",
"Initializing DMAs" => "man/dmas.md",
"Convolution Matrices" => "man/matrix.md",
"Forward Models" => "man/forward.md",
"Inverse Models" => "man/inverse.md",
"Performance Benchmarks" => "man/benchmarks.md",
],
"Library" => Any[
"Physics" => "lib/physics.md",
"Data Types" => "lib/types.md",
"Operators" => "lib/operators.md",
"Helper Functions" => "lib/helpers.md",
"Inversion Routines" => "lib/inversion.md",
"Benchmarks" => "lib/benchmarks.md"
],

"References" => "references.md"
]
)

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