We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Update paths to scripts
Fix anchor/heading ordering
Remove incorrect command from link error cleaning section.
Update link cleaning example commands
Added link to VCF Genotyping page
Link to infer edges and read threading pages
--seq2 arguments should be separated by a colon
Cleaned up genotyping information a bit
Add description of genotyping
Don't create multiallelic VCFs
Added note on VCF proccessing
Tidied up variant calling sections
Added memory arguments to command examples
Added section on vcfcov command
How to generate kmer distance matrix; ctx31 -> mccortex31
Updated Workflow Examples (markdown)
Pooled cleaning by merging into single colour
Add GFA output
Using new link cleaning steps
Added section on running McCortex Pipeline
Added section on post-processing a VCF
Added documentation for cleaning links
Added calls2vcf usage
Link to contig assembly page
Updated ctx-contigs usage
change file extensions ctp -> ctp.gz
Added note about circos plots
Added breakpoint caller instructions
Updated bubble calling section