Merge pull request #134 from mcode/dev

Dev
mcode · Feb 26, 2024 · 28cb300 · 28cb300
2 parents cd018c5 + d32b27c
commit 28cb300
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Showing 5 changed files with 113 additions and 22 deletions.
diff --git a/README.md b/README.md
@@ -20,20 +20,20 @@ a) `REACT_APP_LAUNCH_URL=http://example.com PORT=6000 npm start` or b) by specif
 
 Following are a list of modifiable paths:
 
-| URI Name        | Default                                    |
-| --------------- | ------------------------------------------ |
-| AUTH_SERVER_URI | `http://localhost:8090`                    |
-| HTTPS_CERT_PATH | `server.cert`                              |
-| HTTPS_KEY_PATH  | `server.key`                               |
-| LOGGING_LEVEL   | `debug`                                    |
-| MONGO_DB_NAME   | `remsadmin`                                |
-| MONGO_URL       | `mongodb://rems-user:pass@127.0.0.1:27017` |
-| PORT            | `8090`                                     |
-| RESOURCE_SERVER | `http://localhost:8090`                    |
-| SMART_ENDPOINT  | `http://localhost:4040/launch`             |
-| USE_HTTPS       | `false`                                    |
-| VSAC_API_KEY    | `changeMe`                                 |
-| WHITELIST       | `http://localhost, http://localhost:3005`  |
+| URI Name        | Default                                    | Description                                                                                           |
+| --------------- | ------------------------------------------ | ------------------------------------------------------------------------------------------------------|
+| AUTH_SERVER_URI | `http://localhost:8090`                    | The base url of the auth server, currently set to the base url of this app.                           |
+| HTTPS_CERT_PATH | `server.cert`                              | Path to a certificate for encryption, allowing HTTPS. Unnecessary if using HTTP.                      |
+| HTTPS_KEY_PATH  | `server.key`                               | Path to a key for encryption, allowing HTTPS. Unnecessary if using HTTP.                              |
+| LOGGING_LEVEL   | `debug`                                    | Amount to output in the log, can be changed to verbose, info, warn, or error.                         |
+| MONGO_DB_NAME   | `remsadmin`                                | Name of the database table being used. Should be changed if not using the Mongo instructions below.   |                 
+| MONGO_URL       | `mongodb://rems-user:pass@127.0.0.1:27017` | URL for the connection to the database, should be changed if not using the Mongo instructions below.  |
+| PORT            | `8090`                                     | Port that this server should run on, change if there are conflicts with port usage.                   |
+| RESOURCE_SERVER | `http://localhost:8090`                    | Base URL of this server, should match with port.                                                      |
+| SMART_ENDPOINT  | `http://localhost:4040/launch`             | Launch URL of associated SMART app, should be changed if not using the REMS Smart App.                |
+| USE_HTTPS       | `false`                                    | Change to true to enable HTTPS. Ensure that HTTPS_CERT_PATH and HTTPS_KEY_PATH are valid.             |
+| VSAC_API_KEY    | `changeMe`                                 | Replace with VSAC API key for pulling down ValueSets.  Request an API Key from the [VSAC website](https://vsac.nlm.nih.gov/)                                                 |
+| WHITELIST       | `http://localhost, http://localhost:3005`  | List of valid URLs for CORS. Should include any URLs the server accesses for resources.               |
 
 ## Running the Mongo DB instance
 

diff --git a/src/cards/Card.ts b/src/cards/Card.ts
@@ -5,12 +5,12 @@ interface Source {
   url: URL;
   icon?: URL;
 }
-interface Action {
+export interface Action {
   type: string;
   description: string;
   resource?: Resource | string;
 }
-interface Suggestion {
+export interface Suggestion {
   label: string;
   uuid?: string;
   actions: Action[];

diff --git a/src/cds-library/CRD-DTR/IPledge/R4/resources/Questionnaire-R4-IPledge.json b/src/cds-library/CRD-DTR/IPledge/R4/resources/Questionnaire-R4-IPledge.json
@@ -415,7 +415,7 @@
                 },
                 {
                     "linkId": "6.11",
-                    "text": "10. I will not give blood while taking isotretinoin or for 1 moth after I stop taking isotretinoin. I understand that if someone who is pregnant gets my donated blood, their baby may be exposed to isotretinoin and may be born with serious birth defects.",
+                    "text": "10. I will not give blood while taking isotretinoin or for 1 month after I stop taking isotretinoin. I understand that if someone who is pregnant gets my donated blood, their baby may be exposed to isotretinoin and may be born with serious birth defects.",
                     "type": "boolean",
                     "required": true
                 },

diff --git a/src/hooks/hookResources.ts b/src/hooks/hookResources.ts
@@ -1,5 +1,13 @@
-import { MedicationRequest, Coding, FhirResource, Identifier } from 'fhir/r4';
-import Card, { Link } from '../cards/Card';
+import {
+  MedicationRequest,
+  Coding,
+  FhirResource,
+  Identifier,
+  Task,
+  Questionnaire,
+  Patient
+} from 'fhir/r4';
+import Card, { Link, Suggestion, Action } from '../cards/Card';
 import {
   HookPrefetch,
   OrderSignPrefetch,
@@ -17,6 +25,16 @@ type HandleCallback = (
   contextRequest: FhirResource | undefined,
   patient: FhirResource | undefined
 ) => Promise<void>;
+
+interface Requirement {
+  name: string;
+  description: string;
+  stakeholderType: string;
+  createNewCase: boolean;
+  resourceId: string;
+  requiredToDispense: boolean;
+  appContext?: string;
+}
 export interface CardRule {
   links: Link[];
   summary?: string;
@@ -364,6 +382,9 @@ export async function handleCardOrder(
                       card.addLink(
                         createSmartLink(requirement.name, requirement.appContext, contextRequest)
                       );
+                      if (patient && patient.resourceType === 'Patient') {
+                        createQuestionnaireSuggestion(card, requirement, patient);
+                      }
                       smartLinkCount++;
                     }
                   }
@@ -372,6 +393,9 @@ export async function handleCardOrder(
                   card.addLink(
                     createSmartLink(requirement.name, requirement.appContext, contextRequest)
                   );
+                  if (patient && patient.resourceType === 'Patient') {
+                    createQuestionnaireSuggestion(card, requirement, patient);
+                  }
                   smartLinkCount++;
                 }
               } else {
@@ -380,6 +404,9 @@ export async function handleCardOrder(
                   card.addLink(
                     createSmartLink(requirement.name, requirement.appContext, contextRequest)
                   );
+                  if (patient && patient.resourceType === 'Patient') {
+                    createQuestionnaireSuggestion(card, requirement, patient);
+                  }
                   smartLinkCount++;
                 }
               }
@@ -421,14 +448,14 @@ export async function handleCard(
   // verify ids
   if (
     patient?.id &&
-    patient.id.replace('Patient/', '') !== context.patientId.replace('Patient/', '')
+    patient.id.replace('Patient/', '') !== context.patientId?.replace('Patient/', '')
   ) {
     res.json(buildErrorCard('Context patientId does not match prefetch Patient ID'));
     return;
   }
   if (
     practitioner?.id &&
-    practitioner.id.replace('Practitioner/', '') !== context.userId.replace('Practitioner/', '')
+    practitioner.id.replace('Practitioner/', '') !== context.userId?.replace('Practitioner/', '')
   ) {
     res.json(buildErrorCard('Context userId does not match prefetch Practitioner ID'));
     return;
@@ -463,3 +490,67 @@ export function handleHook(
     res.json(buildErrorCard('Unknown Error'));
   }
 }
+
+export function createQuestionnaireSuggestion(
+  card: Card,
+  requirement: Requirement,
+  patient: Patient
+) {
+  if (requirement.appContext && requirement.appContext.includes('=')) {
+    const qArr = requirement.appContext.split('='); // break up into parts
+    let qUrl = null;
+    for (let i = 0; i < qArr.length; i++) {
+      if (qArr[i].toLowerCase() === 'questionnaire') {
+        if (i + 1 < qArr.length) {
+          // not at end of array
+          qUrl = qArr[i + 1];
+        }
+      }
+    }
+    if (qUrl) {
+      const action: Action = {
+        type: 'create',
+        description: `Create task for "completion of ${requirement.name} Questionnaire`,
+        resource: createQuestionnaireCompletionTask(requirement.name, qUrl, patient)
+      };
+      const suggestion: Suggestion = {
+        label: `Add "Completion of ${requirement.name} Questionnaire" to task list`,
+        actions: [action]
+      };
+      card.addSuggestion(suggestion);
+    }
+  }
+}
+export function createQuestionnaireCompletionTask(
+  questionnaireTitle: string,
+  questionnaireUrl: string,
+  patient: Patient
+) {
+  const taskResource: Task = {
+    resourceType: 'Task',
+    status: 'ready',
+    intent: 'order',
+    code: {
+      coding: [
+        {
+          system: 'http://hl7.org/fhir/uv/sdc/CodeSystem/temp',
+          code: 'complete-questionnaire'
+        }
+      ]
+    },
+    description: `Complete ${questionnaireTitle} Questionnaire`,
+    for: {
+      reference: `${patient.resourceType}/${patient.id}`
+    },
+    authoredOn: `${new Date(Date.now()).toISOString()}`,
+    input: [
+      {
+        type: {
+          text: 'questionnaire'
+        },
+        valueCanonical: `${questionnaireUrl}`
+      }
+    ]
+  };
+  return taskResource;
+}
diff --git a/src/rems-cds-hooks b/src/rems-cds-hooks