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Merge pull request #8 from mbannick/revised-package
Revised package with enhanced estimator for including prior test results
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| ^.*\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
| ^data-raw$ |
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| .Ruserdata | ||
| *rsconnect* | ||
| *.RData | ||
| *.csv | ||
| .DS_Store | ||
| inst/doc | ||
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| Package: XSRecency | ||
| Type: Package | ||
| Title: Cross-Sectional Incidence Estimation | ||
| Version: 0.1.0 | ||
| Author: Fei Gao, [Marlena Bannick](https://www.marlenabannick.com/) | ||
| Version: 0.2.0 | ||
| Author: Marlena Bannick, Fei Gao | ||
| Maintainer: Marlena Bannick <mnorwood@uw.edu> | ||
| Description: More about what it does (maybe more than one line) | ||
| Use four spaces when indenting paragraphs within the Description. | ||
| Description: Estimate cross-sectional incidence of HIV using recent infection testing algorithms | ||
| License: MIT | ||
| Encoding: UTF-8 | ||
| LazyData: false | ||
| RoxygenNote: 7.1.2 | ||
| Roxygen: list(markdown = TRUE) | ||
| Imports: | ||
| stats, | ||
| utils, | ||
| magrittr, | ||
| data.table | ||
| Depends: | ||
| R (>= 2.10) | ||
| Suggests: | ||
| knitr, | ||
| rmarkdown | ||
| VignetteBuilder: knitr |
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| # Generated by roxygen2: do not edit by hand | ||
|
|
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| S3method(simulate,beta) | ||
| S3method(simulate,nbeta) | ||
| S3method(simulate,studies) | ||
| export(adj.bias) | ||
| export(adjusted.estimate) | ||
| export(assay.properties.est) | ||
| export(assay.properties.nsim) | ||
| export(fit.cubic) | ||
| export(generate.data) | ||
| export(get.adjusted) | ||
| export(get.gamma.params) | ||
| export(get.snapshot) | ||
| export(integrate.phi) | ||
| export(phi.hat) | ||
| export(sim.infection.times) | ||
| export(snap.bias) | ||
| export(snapshot.estimate) | ||
| export(true.frr) | ||
| export(true.shadow.adj) | ||
| export(true.shadow.snap) | ||
| export(true.window.mdri) | ||
| export(var.log.to.var) | ||
| export(variance) | ||
| import(magrittr) | ||
| export(createRitaCephia) | ||
| export(downloadCephia) | ||
| export(estAdjusted) | ||
| export(estEnhanced) | ||
| export(estRitaProperties) | ||
| export(estSnapshot) | ||
| export(getRitaOptions) | ||
| export(getTestRecentFunc) | ||
| export(getTestRecentFuncAdj) | ||
| export(integratePhi) | ||
| export(simCrossSect) | ||
| export(simExternal) | ||
| export(simPriorTests) | ||
| import(dplyr) | ||
| import(formula.tools) | ||
| import(purrr) | ||
| import(tidyr) | ||
| import(zen4R) | ||
| importFrom(data.table,data.table) | ||
| importFrom(data.table,melt.data.table) | ||
| importFrom(data.table,setnames) | ||
| importFrom(geepack,geese) |
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| ^data-raw$ |
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