0.4.1

Release notes for sbmlutils 0.4.1

Highlights

New features

Fixes

• fixes coverage report

Deprecated features

sbmlutils-v0.4.0: python utilities for SBML

Release notes for sbmlutils 0.4.0

Highlights

• switch from travis to github actions
• black code formating; isort import handling
• type annotations and documentations
• removed future imports and other legacy code
• refactored unittest to pytest
• cobra and optlang now optional
• cleanup of function signatures
• more comprehensive type annotations

New features

• python 3.8 support
• support and CI-CD for Mac-OS and Windows

Fixes

• fixed pep8 issues
• fixed compressed SBML loading

Deprecated features

• refactored DFBA to https://github.com/matthiaskoenig/dfba

sbmlutils-v0.3.9: python utilities for SBML

• full support for distrib (distributions and uncertainty)

sbmlutils-v0.3.8: python utilities for SBML

Release notes

0.3.8

• python 3.7 support (dropping py3.5)
• model manipulation (merging of models)

sbmlutils-v0.3.7: python utilities for SBML

0.3.7

• documentation updated
• additional annotation formats supported
• support of formula and charge on species
• fixed tests
• bug fixes

sbmlutils-v0.3.6

• support for mass and charge
• refactored and simplified Reactions
• better port support
• exchange reaction template

sbmlutils-v0.3.5

• bugfix missing files

sbmlutils-v0.3.4

• improved annotation support (inline annotations, annotation by url)
• checking against MIRIAM collections and patterns

sbmlutils-v0.3.3

Update cobrapy dependencies and bugfixes.

sbmlutils-v0.3.2

Merge pull request #117 from matthiaskoenig/develop

updated cobra dependencies for pip installation