0.4.12

Release notes for sbmlutils 0.4.12

New features

Fixes

• fixed model merging

Other

• added model merging example and updated documentation
• fixed failing model merging tests

Deprecated features

Backwards incompatible changes

0.4.11

Release notes for sbmlutils 0.4.11

New features

• add set of curated biomodels and test reports (#199)

Fixes

• Fix #224, units not set on AssignmentRules and RateRules
• Fix #208, fixed formulas with restricted symbols
• Bugfix recursive piecewise parsing in Mathml to Sympy

Other

• Removed old type annotations

Deprecated features

Backwards incompatible changes

0.4.10

Release notes for sbmlutils 0.4.10

New features

• support simple generation of all SBML levels and versions #215
• complete mypy check and type annotions (many small bug fixes)
• support of uncertainties in HTML reports #133

Fixes

• added annotations and uncertainties to all core objects
• improved/consistent handling of compartment size and parameter value
• fixing mypy issues #192
• refactored information for SBML report
• CI for documentation #212
• allow empty equations in reactions (valid with SBML L3V2)
• first class support for comp:ReplacedBy elements
• bugfix litre vs liter and metre vs meter bug

Other

Deprecated features

Backwards incompatible changes

0.4.9

Release notes for sbmlutils 0.4.9

New features

Fixes

Other

Deprecated features

Backwards incompatible changes

0.4.8

Release notes for sbmlutils 0.4.8

New features

• API documentation
• improved examples

Fixes

• updated fstrings in reports #185
• fixed broken documentation links #179
• updated issue templates #180
• added type annotations and argument documentation in reports module #184
• flake8 fixes #198
• fix inline units in mathml rendering #201

Other

• sympy mathml formating and conversion #195

Deprecated features

• removed eventdata
• removed unsupported multi information

Backwards incompatible changes

• sbmlutils.templates moved to sbmlutils.examples.templates
• sbmlutils.modelcreator.creator moved to sbmlutils.creator

0.4.7

Release notes for sbmlutils 0.4.7

New features

Fixes

• update libroadrunner>=2.0.5 (bugfix logging)

Other

• updated contributing information
• templates for issues, questions, feature requests
• reporting of dependencies for debugging

Deprecated features

Backwards incompatible changes

0.4.6

Release notes for sbmlutils 0.4.6

• simplified model factory
• improved and simplified model examples
• support of distrib with comp (flattening)
• update to libsbml>=5.19.0
• update libroadrunner>=2.0.4
• bugfix #173, deprecated xlrd replaced with openpyxl
• improved test coverage to >70%
• dropping python 3.6 support

0.4.5

Release notes for sbmlutils 0.4.5

• ensuring no diff on saving SBML
• examples for boundary condition and initial condition

0.4.4

Release notes for sbmlutils 0.4.4

• fixed readthedocs build
• fixed code coverage reports
• fixed packaging of additional resources (#168)

0.4.3

Release notes for sbmlutils 0.4.2

• bugfix image in README
• updated and cleanup of documentation