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Update README.md
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Matt Galbraith authored and Matt Galbraith committed Dec 2, 2022
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -33,7 +33,7 @@ mkdir homer_data && cd homer_data
wget http://homer.ucsd.edu/homer/configureHomer.pl
perl ./configureHomer.pl install hg38 # this will download "hg38" and "human" annotation packages

# Optional: archive and compress archive for transfer to eg HPC without internet access
# Optional: archive and compress for transfer to eg HPC without internet access
cd .. && tar -czvf homer_data.tar.gz homer_data
# Transfer to final location and extract
tar -xzvf homer_data.tar.gz
Expand Down Expand Up @@ -62,7 +62,7 @@ docker build -t singularity .
docker run --rm -it -v $PWD:$PWD -w $PWD singularity singularity
```

### 5. Save Docker image as tar and convert to sif
### 5. Save Docker image as tar and convert to sif (using singularity run from Docker container)
```bash
cd $WORKING_DIR
docker save <Image_ID> -o homer-docker.tar # = IMAGE_ID of homer image
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