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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(NetMHCScript_HLAI)
export(NetMHCScript_HLAII)
export(NetMHC_Import_HLAI)
export(NetMHC_Import_HLAII)
export(Selfness_Features_HLAI)
export(Selfness_Features_HLAII)
export(Selfness_Score)
export(Selfness_Score_Extrapolation)
export(UniProt_Proteome_AlignmentScores)
export(UniProt_Proteome_ExactMatch)
export(UniProt_Proteome_Import)
export(differentialPresentationAnalysis)
import(Peptides)
import(ggplot2)
importFrom(BBmisc,chunk)
importFrom(Biostrings,AA_STANDARD)
importFrom(RColorBrewer,brewer.pal)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,setcolorder)
importFrom(data.table,setorder)
importFrom(data.table,transpose)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,last)
importFrom(dplyr,left_join)
importFrom(dplyr,matches)
importFrom(dplyr,mutate)
importFrom(dplyr,n_distinct)
importFrom(dplyr,nth)
importFrom(dplyr,one_of)
importFrom(dplyr,rename)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,tibble)
importFrom(dplyr,transmute)
importFrom(extraTrees,extraTrees)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(fst,read.fst)
importFrom(fst,read_fst)
importFrom(fst,write.fst)
importFrom(fst,write_fst)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,rremove)
importFrom(ggpubr,theme_pubr)
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_names)
importFrom(magrittr,set_rownames)
importFrom(mlr,createDummyFeatures)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,splitIndices)
importFrom(parallel,stopCluster)
importFrom(pbapply,pbapply)
importFrom(pbapply,pblapply)
importFrom(pbapply,setTimerProgressBar)
importFrom(pbapply,timerProgressBar)
importFrom(purrr,flatten)
importFrom(readr,read_csv)
importFrom(readr,read_delim)
importFrom(readr,write_csv)
importFrom(readr,write_delim)
importFrom(seqinr,read.fasta)
importFrom(seqinr,write.fasta)
importFrom(stringi,stri_reverse)
importFrom(stringr,fixed)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_sub)
importFrom(tidyr,drop_na)
importFrom(tidyr,gather)
importFrom(tidyr,replace_na)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(utils,write.table)