diff --git a/.nojekyll b/.nojekyll index fb7a926..e361fe6 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -3e68cf98 \ No newline at end of file +2c043b83 \ No newline at end of file diff --git a/data_details.html b/data_details.html deleted file mode 100644 index f81cc5d..0000000 --- a/data_details.html +++ /dev/null @@ -1,352 +0,0 @@ - - - - - - - - - -MBON Data Report – data_details - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- -
- -
- - - - -
- - - - - - -
- -
- - - - \ No newline at end of file diff --git a/index.html b/index.html index 21d4fb6..c2021fd 100644 --- a/index.html +++ b/index.html @@ -168,7 +168,7 @@

MBON Data Report(s)

-
+
setup 
if (!requireNamespace("librarian", quietly = TRUE)) {
@@ -186,14 +186,14 @@ 
MBON Data Report(s)

 )
-
+
read in data from csv 
source(here("R/getCleanedData.R"))
 data <- getCleanedData()
-
+
create word cloud from titles & descriptions 
combined_text <- paste(data$`Dataset.title`, data$`Dataset.summary`, collapse = " ")
@@ -226,7 +226,7 @@ 
MBON Data Report(s)
-
+
create a sankey diagram 
yes_values <- c("yes")
@@ -285,8 +285,8 @@ 
MBON Data Report(s)

 p
-
- +
+
diff --git a/index_files/figure-html/unnamed-chunk-3-1.png b/index_files/figure-html/unnamed-chunk-3-1.png index 9b607c8..fce0644 100644 Binary files a/index_files/figure-html/unnamed-chunk-3-1.png and b/index_files/figure-html/unnamed-chunk-3-1.png differ diff --git a/ioos_metrics.html b/ioos_metrics.html deleted file mode 100644 index 7d3dfd2..0000000 --- a/ioos_metrics.html +++ /dev/null @@ -1,422 +0,0 @@ - - - - - - - - - -MBON Data Report - Use IOOS Metrics - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- -
- -
- - - - -
- -
-
-

Use IOOS Metrics

-
- - - -
- - - - -
- - -
- -
-
-setup -
if (!requireNamespace("librarian", quietly = TRUE)) {
-  # If not installed, install the package
-  install.packages("librarian")
-}
-
-librarian::shelf(
-  dplyr,
-  here
-)
-
-
-
-
-load data -
source(here("R/getCleanedData.R"))
-data <- getCleanedData()
-
-
- - - -
- -
- - - - \ No newline at end of file diff --git a/listings.json b/listings.json index da77fbf..1e710bb 100644 --- a/listings.json +++ b/listings.json @@ -2,13 +2,12 @@ { "listing": "/regional_report/regional_reports.html", "items": [ - "/regional_report/regional_reports/AMBON.html", "/regional_report/regional_reports/All - this is a global dataset.html", "/regional_report/regional_reports/Arctic.html", "/regional_report/regional_reports/Central California.html", + "/regional_report/regional_reports/Coastal New England.html", "/regional_report/regional_reports/GLOS MBON.html", "/regional_report/regional_reports/Gulf of Maine.html", - "/regional_report/regional_reports/New Hampshire and Casco Bay.html", "/regional_report/regional_reports/SE US.html", "/regional_report/regional_reports/Southern California.html", "/regional_report/regional_reports/Southern California Bight.html" diff --git a/regional_report/regional_report.html b/regional_report/regional_report.html index 4a065df..011f4b8 100644 --- a/regional_report/regional_report.html +++ b/regional_report/regional_report.html @@ -163,7 +163,7 @@

SE US

-
+
setup 
if (!requireNamespace("librarian", quietly = TRUE)) {
@@ -179,7 +179,7 @@ 
SE US

SE US Report

-
+
load data 
source(here("R/getCleanedData.R"))
@@ -187,7 +187,7 @@ 
SE US Report

   filter(mbon.project == params$project_id)
-
+
show dataset titles 
print(data$Dataset.title)
diff --git a/regional_report/regional_reports.html b/regional_report/regional_reports.html index 02bac32..1a708cb 100644 --- a/regional_report/regional_reports.html +++ b/regional_report/regional_reports.html @@ -168,27 +168,7 @@

Project Reports

-
- -
-
 
-
-
-AMBON -
-
- -
-
-
- -
-
-
-
- -
-
+
 
@@ -208,7 +188,7 @@
-
+
 
@@ -228,7 +208,7 @@
-
+
 
@@ -248,13 +228,13 @@
-
- +
+
 
-GLOS MBON +Coastal New England
@@ -268,13 +248,13 @@
-
- +
+
 
-Gulf of Maine +GLOS MBON
@@ -288,13 +268,13 @@
-
- +
+
 
-New Hampshire and Casco Bay +Gulf of Maine
@@ -308,7 +288,7 @@
-
+
 
@@ -328,7 +308,7 @@
-
+
 
@@ -348,7 +328,7 @@
-
+
 
diff --git a/regional_report/regional_reports/AMBON.html b/regional_report/regional_reports/AMBON.html deleted file mode 100644 index 2feb859..0000000 --- a/regional_report/regional_reports/AMBON.html +++ /dev/null @@ -1,447 +0,0 @@ - - - - - - - - - -MBON Data Report - AMBON - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-
- -
- -
- - - - -
- -
-
-

AMBON

-
- - - -
- - - - -
- - -
- -
-
-setup -
if (!requireNamespace("librarian", quietly = TRUE)) {
-  # If not installed, install the package
-  install.packages("librarian")
-}
-
-librarian::shelf(
-  dplyr,
-  here
-)
-
-
-
-

AMBON Report

-
-
-load data -
source(here("R/getCleanedData.R"))
-data <- getCleanedData() %>%
-  filter(mbon.project == params$project_id)
-
-
-
-
-show dataset titles -
print(data$Dataset.title)
-
-
-
[1] "Benthic Epifauna Biomass and Abundance Data, Arctic Marine Biodiversity Observing Network (AMBON) research cruise, August 2017"                                                                                   
-[2] "Fish length, weight, and abundance data from trawl surveys in the Chukchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 09 August 2015 - 03 September 2015"
-[3] "Marine Bird Sighting Data, Arctic Marine Biodiversity Observing Network (AMBON) Chukchi Sea research cruise on the vessel Norseman II from 2017-08-05 to 2017-08-25"                                              
-[4] "Marine Bird Sighting Data, Arctic Marine Biodiversity Observing Network (AMBON) Chukchi Sea research cruise on the vessel Norseman II from 2015-08-09 to 2015-09-03"                                              
-[5] "Vessel line-transect surveys of Arctic cetaceans in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 2015-08-09 - 2015-09-03"                    
-[6] "Vessel line-transect surveys of Arctic pinnipeds in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 2015-08-09 - 2015-09-03"                    
-[7] "Vessel line-transect surveys of Arctic marine mammals in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II from 2017-08-05 to - 2017-08-25"
-
-
- - -
- -
- -
- - - - \ No newline at end of file diff --git a/regional_report/regional_reports/Arctic.html b/regional_report/regional_reports/Arctic.html index 81612cf..05b34c2 100644 --- a/regional_report/regional_reports/Arctic.html +++ b/regional_report/regional_reports/Arctic.html @@ -193,7 +193,18 @@

Arctic Report

print(data$Dataset.title)
-
[1] "Benthic Epifauna Biomass and Abundance Data in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the Norseman II from 2015-08-09 to 2015-09-03 (NCEI Accession 0177837)"
+
 [1] "Benthic Epifauna Biomass and Abundance Data in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the Norseman II from 2015-08-09 to 2015-09-03 (NCEI Accession 0177837)"  
+ [2] "AMBON_2024_Epifauna_abundance"                                                                                                                                                                                    
+ [3] "eDNA from Arctic Cruises, 2024"                                                                                                                                                                                   
+ [4] "Chukchi Ecosystem Observation Passive Acoustic Data"                                                                                                                                                              
+ [5] "adrienne@axiomdatascience.com"                                                                                                                                                                                    
+ [6] "Benthic Epifauna Biomass and Abundance Data, Arctic Marine Biodiversity Observing Network (AMBON) research cruise, August 2017"                                                                                   
+ [7] "Fish length, weight, and abundance data from trawl surveys in the Chukchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 09 August 2015 - 03 September 2015"
+ [8] "Marine Bird Sighting Data, Arctic Marine Biodiversity Observing Network (AMBON) Chukchi Sea research cruise on the vessel Norseman II from 2017-08-05 to 2017-08-25"                                              
+ [9] "Marine Bird Sighting Data, Arctic Marine Biodiversity Observing Network (AMBON) Chukchi Sea research cruise on the vessel Norseman II from 2015-08-09 to 2015-09-03"                                              
+[10] "Vessel line-transect surveys of Arctic cetaceans in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 2015-08-09 - 2015-09-03"                    
+[11] "Vessel line-transect surveys of Arctic pinnipeds in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II, 2015-08-09 - 2015-09-03"                    
+[12] "Vessel line-transect surveys of Arctic marine mammals in the Chuckchi Sea, Arctic Marine Biodiversity Observing Network (AMBON) research cruise on the vessel Norseman II from 2017-08-05 to - 2017-08-25"
diff --git a/regional_report/regional_reports/New Hampshire and Casco Bay.html b/regional_report/regional_reports/Coastal New England.html similarity index 96% rename from regional_report/regional_reports/New Hampshire and Casco Bay.html rename to regional_report/regional_reports/Coastal New England.html index f5f7543..9cc7083 100644 --- a/regional_report/regional_reports/New Hampshire and Casco Bay.html +++ b/regional_report/regional_reports/Coastal New England.html @@ -7,7 +7,7 @@ -MBON Data Report - New Hampshire and Casco Bay +MBON Data Report - Coastal New England